PARTOFNEQ is not able to match all annotations if the Annotations are created by external analysis engine. Here is an example
The TestAE is generating 4 annotations for input test rebecca minkoff mini mac
rebecca minkoff mini mac -> TestType
minkoff -> TestType
mini mac -> TestType
mac -> TestType
PARTOFNEQ is able to match only "minkoff" and "mini mac".
It seems that ExecAction is removing the Type form RutaBasic.partOf array at some point of the execution. After that in PartOfNeqCondition when method check is executed partOf variable is always false (see below source code). It is because the Type was removed previously from ruta basic.
boolean partOf = beginAnchor.isPartOf(t) || endAnchor.isPartOf(t);