Details
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New Feature
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Status: To Do
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Minor
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Resolution: Unresolved
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None
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None
Description
Given TAVERNA-877, the Tool Activity can be made to run Common Workflow Language tools by generating the corresponding "docker run" command line with appropriate folder mappings from CWL's DockerRequirement description in YAML.
CWL's ShellCommandRequirement could probably be ported directly
http://common-workflow-language.github.io/draft-3/#ShellCommandRequirement
http://common-workflow-language.github.io/draft-3/#DockerRequirement
Attachments
Issue Links
- is blocked by
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TAVERNA-877 Parser for Common Workflow Language workflows
- To Do
- is part of
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TAVERNA-900 GSOC: Add Common Workflow Language support to Taverna
- To Do
- is related to
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TAVERNA-880 Browse+use CWL tool descriptions
- Done
- mentioned in
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