Uploaded image for project: 'Spark'
  1. Spark
  2. SPARK-38652

uploadFileUri should preserve file scheme

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Details

    • Bug
    • Status: Resolved
    • Blocker
    • Resolution: Fixed
    • 3.3.0
    • 3.1.3, 3.0.4, 3.3.0, 3.2.2
    • Kubernetes
    • None

    Description

      DepsTestsSuite in k8s IT test is blocked with PathIOException in hadoop-aws-3.3.2. Exception Message is as follow

      Exception in thread "main" org.apache.spark.SparkException: Uploading file /Users/hengzhen.sq/IdeaProjects/spark/dist/examples/jars/spark-examples_2.12-3.4.0-SNAPSHOT.jar failed...        
at org.apache.spark.deploy.k8s.KubernetesUtils$.uploadFileUri(KubernetesUtils.scala:332)        
at org.apache.spark.deploy.k8s.KubernetesUtils$.$anonfun$uploadAndTransformFileUris$1(KubernetesUtils.scala:277)        
at scala.collection.TraversableLike.$anonfun$map$1(TraversableLike.scala:286)        
at scala.collection.mutable.ResizableArray.foreach(ResizableArray.scala:62)        
at scala.collection.mutable.ResizableArray.foreach$(ResizableArray.scala:55)        
at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:49)        
at scala.collection.TraversableLike.map(TraversableLike.scala:286)        
at scala.collection.TraversableLike.map$(TraversableLike.scala:279)        
at scala.collection.AbstractTraversable.map(Traversable.scala:108)        
at org.apache.spark.deploy.k8s.KubernetesUtils$.uploadAndTransformFileUris(KubernetesUtils.scala:275)        
at org.apache.spark.deploy.k8s.features.BasicDriverFeatureStep.$anonfun$getAdditionalPodSystemProperties$1(BasicDriverFeatureStep.scala:187)       
at scala.collection.immutable.List.foreach(List.scala:431)        
at org.apache.spark.deploy.k8s.features.BasicDriverFeatureStep.getAdditionalPodSystemProperties(BasicDriverFeatureStep.scala:178)        
at org.apache.spark.deploy.k8s.submit.KubernetesDriverBuilder.$anonfun$buildFromFeatures$5(KubernetesDriverBuilder.scala:86)        at scala.collection.LinearSeqOptimized.foldLeft(LinearSeqOptimized.scala:126)        
at scala.collection.LinearSeqOptimized.foldLeft$(LinearSeqOptimized.scala:122)        
at scala.collection.immutable.List.foldLeft(List.scala:91)        
at org.apache.spark.deploy.k8s.submit.KubernetesDriverBuilder.buildFromFeatures(KubernetesDriverBuilder.scala:84)        
at org.apache.spark.deploy.k8s.submit.Client.run(KubernetesClientApplication.scala:104)        
at org.apache.spark.deploy.k8s.submit.KubernetesClientApplication.$anonfun$run$5(KubernetesClientApplication.scala:248)        
at org.apache.spark.deploy.k8s.submit.KubernetesClientApplication.$anonfun$run$5$adapted(KubernetesClientApplication.scala:242)
at org.apache.spark.util.Utils$.tryWithResource(Utils.scala:2738)        
at org.apache.spark.deploy.k8s.submit.KubernetesClientApplication.run(KubernetesClientApplication.scala:242)        
at org.apache.spark.deploy.k8s.submit.KubernetesClientApplication.start(KubernetesClientApplication.scala:214)        
at org.apache.spark.deploy.SparkSubmit.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:958)        
at org.apache.spark.deploy.SparkSubmit.doRunMain$1(SparkSubmit.scala:180)        
at org.apache.spark.deploy.SparkSubmit.submit(SparkSubmit.scala:203)        
at org.apache.spark.deploy.SparkSubmit.doSubmit(SparkSubmit.scala:90)        
at org.apache.spark.deploy.SparkSubmit$$anon$2.doSubmit(SparkSubmit.scala:1046)        
at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:1055)        
at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)Caused by: org.apache.spark.SparkException: Error uploading file spark-examples_2.12-3.4.0-SNAPSHOT.jar        
at org.apache.spark.deploy.k8s.KubernetesUtils$.uploadFileToHadoopCompatibleFS(KubernetesUtils.scala:355)        
at org.apache.spark.deploy.k8s.KubernetesUtils$.uploadFileUri(KubernetesUtils.scala:328)        
... 30 more
Caused by: org.apache.hadoop.fs.PathIOException: `Cannot get relative path for URI:file:///Users/hengzhen.sq/IdeaProjects/spark/dist/examples/jars/spark-examples_2.12-3.4.0-SNAPSHOT.jar': Input/output error
at org.apache.hadoop.fs.s3a.impl.CopyFromLocalOperation.getFinalPath(CopyFromLocalOperation.java:365)        
at org.apache.hadoop.fs.s3a.impl.CopyFromLocalOperation.uploadSourceFromFS(CopyFromLocalOperation.java:226)        
at org.apache.hadoop.fs.s3a.impl.CopyFromLocalOperation.execute(CopyFromLocalOperation.java:170)        
at org.apache.hadoop.fs.s3a.S3AFileSystem.lambda$copyFromLocalFile$25(S3AFileSystem.java:3920)        
at org.apache.hadoop.fs.statistics.impl.IOStatisticsBinding.lambda$trackDurationOfOperation$5(IOStatisticsBinding.java:499)        at org.apache.hadoop.fs.statistics.impl.IOStatisticsBinding.trackDuration(IOStatisticsBinding.java:444)        
at org.apache.hadoop.fs.s3a.S3AFileSystem.trackDurationAndSpan(S3AFileSystem.java:2337)        
at org.apache.hadoop.fs.s3a.S3AFileSystem.trackDurationAndSpan(S3AFileSystem.java:2356)        
at org.apache.hadoop.fs.s3a.S3AFileSystem.copyFromLocalFile(S3AFileSystem.java:3913)        
at org.apache.spark.deploy.k8s.KubernetesUtils$.uploadFileToHadoopCompatibleFS(KubernetesUtils.scala:352)        
... 31 more

      For more information please refer to HADOOP-18173.

       

      But, DepsTestsSuite with hadoop-aws-3.3.1 works normally.

      hengzhen.sq@b-q922md6r-0237 ~/Desktop$ /Users/hengzhen.sq/IdeaProjects/spark/bin/spark-submit --deploy-mode cluster --class org.apache.spark.examples.SparkRemoteFileTest --master k8s://https://192.168.64.86:8443/ --conf spark.hadoop.fs.s3a.impl=org.apache.hadoop.fs.s3a.S3AFileSystem --conf spark.testing=false  --conf spark.hadoop.fs.s3a.access.key=minio --conf spark.kubernetes.driver.label.spark-app-locator=a8937b5fdf6a444a806ee1c3ecac37fc --conf spark.kubernetes.file.upload.path=s3a://spark --conf spark.authenticate=true --conf spark.executor.instances=1 --conf spark.kubernetes.submission.waitAppCompletion=false --conf spark.kubernetes.executor.label.spark-app-locator=a8937b5fdf6a444a806ee1c3ecac37fc --conf spark.kubernetes.namespace=spark-job --conf spark.kubernetes.authenticate.driver.serviceAccountName=spark --conf spark.hadoop.fs.s3a.secret.key=miniostorage --conf spark.executor.extraJavaOptions=-Dlog4j2.debug --conf spark.hadoop.fs.s3a.endpoint=192.168.64.86:32681 --conf spark.app.name=spark-test-app --conf spark.files=/tmp/tmp7013228683780235449.txt --conf spark.ui.enabled=true --conf spark.driver.extraJavaOptions=-Dlog4j2.debug --conf spark.kubernetes.container.image=registry.cn-hangzhou.aliyuncs.com/smart-spark/spark:test --conf spark.executor.cores=1 --conf spark.jars.packages=org.apache.hadoop:hadoop-aws:3.3.1 --conf spark.hadoop.fs.s3a.connection.ssl.enabled=false /Users/hengzhen.sq/IdeaProjects/spark/dist/examples/jars/spark-examples_2.12-3.4.0-SNAPSHOT.jar tmp7013228683780235449.txt
22/03/25 10:24:10 WARN Utils: Your hostname, B-Q922MD6R-0237.local resolves to a loopback address: 127.0.0.1; using 30.25.86.17 instead (on interface en0)
22/03/25 10:24:10 WARN Utils: Set SPARK_LOCAL_IP if you need to bind to another address
:: loading settings :: url = jar:file:/Users/hengzhen.sq/IdeaProjects/spark/assembly/target/scala-2.12/jars/ivy-2.5.0.jar!/org/apache/ivy/core/settings/ivysettings.xml
Ivy Default Cache set to: /Users/hengzhen.sq/.ivy2/cache
The jars for the packages stored in: /Users/hengzhen.sq/.ivy2/jars
org.apache.hadoop#hadoop-aws added as a dependency
:: resolving dependencies :: org.apache.spark#spark-submit-parent-8220baa6-0490-4484-9779-945d4cf69df4;1.0
	confs: [default]
	found org.apache.hadoop#hadoop-aws;3.3.1 in central
	found com.amazonaws#aws-java-sdk-bundle;1.11.901 in central
	found org.wildfly.openssl#wildfly-openssl;1.0.7.Final in central
:: resolution report :: resolve 224ms :: artifacts dl 6ms
	:: modules in use:
	com.amazonaws#aws-java-sdk-bundle;1.11.901 from central in [default]
	org.apache.hadoop#hadoop-aws;3.3.1 from central in [default]
	org.wildfly.openssl#wildfly-openssl;1.0.7.Final from central in [default]
	---------------------------------------------------------------------
	|                  |            modules            ||   artifacts   |
	|       conf       | number| search|dwnlded|evicted|| number|dwnlded|
	---------------------------------------------------------------------
	|      default     |   3   |   0   |   0   |   0   ||   3   |   0   |
	---------------------------------------------------------------------
:: retrieving :: org.apache.spark#spark-submit-parent-8220baa6-0490-4484-9779-945d4cf69df4
	confs: [default]
	0 artifacts copied, 3 already retrieved (0kB/6ms)
22/03/25 10:24:11 WARN NativeCodeLoader: Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
22/03/25 10:24:11 INFO SparkKubernetesClientFactory: Auto-configuring K8S client using current context from users K8S config file
22/03/25 10:24:12 INFO KerberosConfDriverFeatureStep: You have not specified a krb5.conf file locally or via a ConfigMap. Make sure that you have the krb5.conf locally on the driver image.
22/03/25 10:24:12 WARN MetricsConfig: Cannot locate configuration: tried hadoop-metrics2-s3a-file-system.properties,hadoop-metrics2.properties
22/03/25 10:24:12 INFO MetricsSystemImpl: Scheduled Metric snapshot period at 10 second(s).
22/03/25 10:24:12 INFO MetricsSystemImpl: s3a-file-system metrics system started
22/03/25 10:24:13 INFO KubernetesUtils: Uploading file: /Users/hengzhen.sq/IdeaProjects/spark/dist/examples/jars/spark-examples_2.12-3.4.0-SNAPSHOT.jar to dest: s3a://spark/spark-upload-f49ee7fc-182d-499a-b073-40b298c55e8b/spark-examples_2.12-3.4.0-SNAPSHOT.jar...
22/03/25 10:24:13 INFO KubernetesUtils: Uploading file: /private/tmp/tmp7013228683780235449.txt to dest: s3a://spark/spark-upload-906c6d35-6aa7-4ee8-8c37-434f547c6087/tmp7013228683780235449.txt...
22/03/25 10:24:14 INFO ShutdownHookManager: Shutdown hook called
22/03/25 10:24:14 INFO ShutdownHookManager: Deleting directory /private/var/folders/3t/v_td68551s78mq4c1cpk86gc0000gn/T/spark-e89a395e-c3b4-4619-8c9b-e60310af6503
22/03/25 10:24:14 INFO MetricsSystemImpl: Stopping s3a-file-system metrics system...
22/03/25 10:24:14 INFO MetricsSystemImpl: s3a-file-system metrics system stopped.
22/03/25 10:24:14 INFO MetricsSystemImpl: s3a-file-system metrics system shutdown complete.

      CopyFromLocalFile action in hadoop-aws is different between 3.3.1 and 3.3.2, because 3.3.2 introuduces CopyFromLocalFileOperation.

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        Issue Links

          relates to

          Sub-task - The sub-task of the issue HADOOP-17139 Re-enable optimized copyFromLocal implementation in S3AFileSystem

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Resolved

          Bug - A problem which impairs or prevents the functions of the product. HADOOP-18173 S3a copyFromLocalOperation doesn't support single file

          • Major - Major loss of function.
          • Open
          links to

          Pull request #36010 [Github] Pull Request #36010 (dongjoon-hyun)

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            People

              dongjoon Dongjoon Hyun
              dcoliversun Qian Sun
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                Created:
                Updated:
                Resolved: