[SPARK-19752] OrcGetSplits fails with 0 size files

• Type: Bug
• Status: Resolved
• Priority: Major
• Resolution: Duplicate
• Affects Version/s: 2.1.0
• Component/s: Input/Output
• Assignee: Unassigned
• Reporter: Nick Orka
• Created: 27/Feb/17 16:15
• Updated: 12/Dec/22 18:10
• Resolved: 03/Apr/17 10:01

Description

There is a possibility that during some sql queries a partition may have a 0 size file (empty file). Next time when I try to read from the file by sql query, I'm getting this error:
17/02/27 10:33:11 INFO PerfLogger: </PERFLOG method=OrcGetSplits start=1488191591570 end=1488191591599 duration=29 from=org.apache.hadoop.hive.ql.io.orc.ReaderImpl>
17/02/27 10:33:11 ERROR ApplicationMaster: User class threw exception: java.lang.reflect.InvocationTargetException
java.lang.reflect.InvocationTargetException
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at scala.reflect.runtime.JavaMirrors$JavaMirror$JavaVanillaMethodMirror1.jinvokeraw(JavaMirrors.scala:373)
at scala.reflect.runtime.JavaMirrors$JavaMirror$JavaMethodMirror.jinvoke(JavaMirrors.scala:339)
at scala.reflect.runtime.JavaMirrors$JavaMirror$JavaVanillaMethodMirror.apply(JavaMirrors.scala:355)
at com.sessionm.Datapipeline$.main(Datapipeline.scala:200)
at com.sessionm.Datapipeline.main(Datapipeline.scala)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.spark.deploy.yarn.ApplicationMaster$$anon$2.run(ApplicationMaster.scala:627)
Caused by: java.lang.RuntimeException: serious problem
at org.apache.hadoop.hive.ql.io.orc.OrcInputFormat.generateSplitsInfo(OrcInputFormat.java:1021)
at org.apache.hadoop.hive.ql.io.orc.OrcInputFormat.getSplits(OrcInputFormat.java:1048)
at org.apache.spark.rdd.HadoopRDD.getPartitions(HadoopRDD.scala:199)
at org.apache.spark.rdd.RDD$$anonfun$partitions$2.apply(RDD.scala:248)
at org.apache.spark.rdd.RDD$$anonfun$partitions$2.apply(RDD.scala:246)
at scala.Option.getOrElse(Option.scala:121)
at org.apache.spark.rdd.RDD.partitions(RDD.scala:246)
at org.apache.spark.rdd.MapPartitionsRDD.getPartitions(MapPartitionsRDD.scala:35)
at org.apache.spark.rdd.RDD$$anonfun$partitions$2.apply(RDD.scala:248)
at org.apache.spark.rdd.RDD$$anonfun$partitions$2.apply(RDD.scala:246)
at scala.Option.getOrElse(Option.scala:121)
at org.apache.spark.rdd.RDD.partitions(RDD.scala:246)
at org.apache.spark.rdd.MapPartitionsRDD.getPartitions(MapPartitionsRDD.scala:35)
at org.apache.spark.rdd.RDD$$anonfun$partitions$2.apply(RDD.scala:248)
at org.apache.spark.rdd.RDD$$anonfun$partitions$2.apply(RDD.scala:246)
at scala.Option.getOrElse(Option.scala:121)
at org.apache.spark.rdd.RDD.partitions(RDD.scala:246)
at org.apache.spark.rdd.UnionRDD$$anonfun$1.apply(UnionRDD.scala:84)
at org.apache.spark.rdd.UnionRDD$$anonfun$1.apply(UnionRDD.scala:84)
at scala.collection.parallel.AugmentedIterableIterator$class.map2combiner(RemainsIterator.scala:115)
at scala.collection.parallel.immutable.ParVector$ParVectorIterator.map2combiner(ParVector.scala:62)
at scala.collection.parallel.ParIterableLike$Map.leaf(ParIterableLike.scala:1054)
at scala.collection.parallel.Task$$anonfun$tryLeaf$1.apply$mcV$sp(Tasks.scala:49)
at scala.collection.parallel.Task$$anonfun$tryLeaf$1.apply(Tasks.scala:48)
at scala.collection.parallel.Task$$anonfun$tryLeaf$1.apply(Tasks.scala:48)
at scala.collection.parallel.Task$class.tryLeaf(Tasks.scala:51)
at scala.collection.parallel.ParIterableLike$Map.tryLeaf(ParIterableLike.scala:1051)
at scala.collection.parallel.AdaptiveWorkStealingTasks$WrappedTask$class.internal(Tasks.scala:169)
at scala.collection.parallel.AdaptiveWorkStealingForkJoinTasks$WrappedTask.internal(Tasks.scala:443)
at scala.collection.parallel.AdaptiveWorkStealingTasks$WrappedTask$class.compute(Tasks.scala:149)
at scala.collection.parallel.AdaptiveWorkStealingForkJoinTasks$WrappedTask.compute(Tasks.scala:443)
at scala.concurrent.forkjoin.RecursiveAction.exec(RecursiveAction.java:160)
at scala.concurrent.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at scala.concurrent.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at scala.concurrent.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at scala.concurrent.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
Caused by: java.lang.NullPointerException
at org.apache.hadoop.hive.ql.io.orc.OrcInputFormat$BISplitStrategy.getSplits(OrcInputFormat.java:560)
at org.apache.hadoop.hive.ql.io.orc.OrcInputFormat.generateSplitsInfo(OrcInputFormat.java:1010)
... 35 more
17/02/27 10:33:11 INFO ApplicationMaster: Final app status: FAILED, exitCode: 15, (reason: User class threw exception: java.lang.reflect.InvocationTargetException)

Issue Links

• duplicates: SPARK-19809 NullPointerException on zero-size ORC file