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  1. Spark
  2. SPARK-17765

org.apache.spark.mllib.linalg.VectorUDT cannot be cast to org.apache.spark.sql.types.StructType

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Details

    • Bug
    • Status: Resolved
    • Major
    • Resolution: Fixed
    • 1.6.1, 2.0.0
    • 2.1.0
    • MLlib, PySpark, SQL
    • None

    Description

      The issue in subject happens on attempt to transform DataFrame in Parquet format into ORC while DF contains SparseVector/DenseVector data.

      In sources it looks like that there shouldn't be any serialization issues, but they happens.

      In[4] pqtdf = hqlctx.read.parquet(pqt_feature)

In[5] pqtdf.take(1)
Out[5]: [Row(foo=u'abc, bar=SparseVector(100, {74: 1.0}))]

In[6]: pqtdf.write.format('orc').save('/tmp/orc')
---------------------------------------------------------------------------
Py4JJavaError                             Traceback (most recent call last)
<ipython-input-5-57e68fd0c5cb> in <module>()
----> pqtdf.write.format('orc').save('/tmp/orc')

/usr/local/share/spark/python/pyspark/sql/readwriter.pyc in save(self, path, format, mode, partitionBy, **options)
    395             self._jwrite.save()
    396         else:
--> 397             self._jwrite.save(path)
    398 
    399     @since(1.4)

/usr/local/lib/python2.7/site-packages/py4j/java_gateway.pyc in __call__(self, *args)
    811         answer = self.gateway_client.send_command(command)
    812         return_value = get_return_value(
--> 813             answer, self.gateway_client, self.target_id, self.name)
    814 
    815         for temp_arg in temp_args:

/usr/local/share/spark/python/pyspark/sql/utils.pyc in deco(*a, **kw)
     43     def deco(*a, **kw):
     44         try:
---> 45             return f(*a, **kw)
     46         except py4j.protocol.Py4JJavaError as e:
     47             s = e.java_exception.toString()

/usr/local/lib/python2.7/site-packages/py4j/protocol.pyc in get_return_value(answer, gateway_client, target_id, name)
    306                 raise Py4JJavaError(
    307                     "An error occurred while calling {0}{1}{2}.\n".
--> 308                     format(target_id, ".", name), value)
    309             else:
    310                 raise Py4JError(

Py4JJavaError: An error occurred while calling o62.save.
: org.apache.spark.SparkException: Job aborted.
	at org.apache.spark.sql.execution.datasources.InsertIntoHadoopFsRelation$$anonfun$run$1.apply$mcV$sp(InsertIntoHadoopFsRelation.scala:156)
	at org.apache.spark.sql.execution.datasources.InsertIntoHadoopFsRelation$$anonfun$run$1.apply(InsertIntoHadoopFsRelation.scala:108)
	at org.apache.spark.sql.execution.datasources.InsertIntoHadoopFsRelation$$anonfun$run$1.apply(InsertIntoHadoopFsRelation.scala:108)
	at org.apache.spark.sql.execution.SQLExecution$.withNewExecutionId(SQLExecution.scala:56)
	at org.apache.spark.sql.execution.datasources.InsertIntoHadoopFsRelation.run(InsertIntoHadoopFsRelation.scala:108)
	at org.apache.spark.sql.execution.ExecutedCommand.sideEffectResult$lzycompute(commands.scala:58)
	at org.apache.spark.sql.execution.ExecutedCommand.sideEffectResult(commands.scala:56)
	at org.apache.spark.sql.execution.ExecutedCommand.doExecute(commands.scala:70)
	at org.apache.spark.sql.execution.SparkPlan$$anonfun$execute$5.apply(SparkPlan.scala:132)
	at org.apache.spark.sql.execution.SparkPlan$$anonfun$execute$5.apply(SparkPlan.scala:130)
	at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:150)
	at org.apache.spark.sql.execution.SparkPlan.execute(SparkPlan.scala:130)
	at org.apache.spark.sql.execution.QueryExecution.toRdd$lzycompute(QueryExecution.scala:55)
	at org.apache.spark.sql.execution.QueryExecution.toRdd(QueryExecution.scala:55)
	at org.apache.spark.sql.execution.datasources.ResolvedDataSource$.apply(ResolvedDataSource.scala:256)
	at org.apache.spark.sql.DataFrameWriter.save(DataFrameWriter.scala:148)
	at org.apache.spark.sql.DataFrameWriter.save(DataFrameWriter.scala:139)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:606)
	at py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:231)
	at py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:381)
	at py4j.Gateway.invoke(Gateway.java:259)
	at py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:133)
	at py4j.commands.CallCommand.execute(CallCommand.java:79)
	at py4j.GatewayConnection.run(GatewayConnection.java:209)
	at java.lang.Thread.run(Thread.java:745)
Caused by: org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in stage 3.0 failed 4 times, most recent failure: Lost task 0.3 in stage 3.0 (TID 185, node123.example.com): org.apache.spark.SparkException: Task failed while writing rows.
	at org.apache.spark.sql.execution.datasources.DefaultWriterContainer.writeRows(WriterContainer.scala:272)
	at org.apache.spark.sql.execution.datasources.InsertIntoHadoopFsRelation$$anonfun$run$1$$anonfun$apply$mcV$sp$3.apply(InsertIntoHadoopFsRelation.scala:150)
	at org.apache.spark.sql.execution.datasources.InsertIntoHadoopFsRelation$$anonfun$run$1$$anonfun$apply$mcV$sp$3.apply(InsertIntoHadoopFsRelation.scala:150)
	at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:66)
	at org.apache.spark.scheduler.Task.run(Task.scala:89)
	at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:214)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
	at java.lang.Thread.run(Thread.java:745)
Caused by: java.lang.ClassCastException: org.apache.spark.mllib.linalg.VectorUDT cannot be cast to org.apache.spark.sql.types.StructType
	at org.apache.spark.sql.hive.HiveInspectors$class.wrap(HiveInspectors.scala:554)
	at org.apache.spark.sql.hive.orc.OrcOutputWriter.wrap(OrcRelation.scala:66)
	at org.apache.spark.sql.hive.orc.OrcOutputWriter.wrapOrcStruct(OrcRelation.scala:128)
	at org.apache.spark.sql.hive.orc.OrcOutputWriter.writeInternal(OrcRelation.scala:139)
	at org.apache.spark.sql.execution.datasources.DefaultWriterContainer.writeRows(WriterContainer.scala:264)
	... 8 more

Driver stacktrace:
	at org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1431)
	at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1419)
	at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1418)
	at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
	at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:47)
	at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1418)
	at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:799)
	at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:799)
	at scala.Option.foreach(Option.scala:236)
	at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:799)
	at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:1640)
	at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1599)
	at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1588)
	at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:48)
	at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:620)
	at org.apache.spark.SparkContext.runJob(SparkContext.scala:1832)
	at org.apache.spark.SparkContext.runJob(SparkContext.scala:1845)
	at org.apache.spark.SparkContext.runJob(SparkContext.scala:1922)
	at org.apache.spark.sql.execution.datasources.InsertIntoHadoopFsRelation$$anonfun$run$1.apply$mcV$sp(InsertIntoHadoopFsRelation.scala:150)
	... 27 more
Caused by: org.apache.spark.SparkException: Task failed while writing rows.
	at org.apache.spark.sql.execution.datasources.DefaultWriterContainer.writeRows(WriterContainer.scala:272)
	at org.apache.spark.sql.execution.datasources.InsertIntoHadoopFsRelation$$anonfun$run$1$$anonfun$apply$mcV$sp$3.apply(InsertIntoHadoopFsRelation.scala:150)
	at org.apache.spark.sql.execution.datasources.InsertIntoHadoopFsRelation$$anonfun$run$1$$anonfun$apply$mcV$sp$3.apply(InsertIntoHadoopFsRelation.scala:150)
	at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:66)
	at org.apache.spark.scheduler.Task.run(Task.scala:89)
	at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:214)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
	... 1 more
Caused by: java.lang.ClassCastException: org.apache.spark.mllib.linalg.VectorUDT cannot be cast to org.apache.spark.sql.types.StructType
	at org.apache.spark.sql.hive.HiveInspectors$class.wrap(HiveInspectors.scala:554)
	at org.apache.spark.sql.hive.orc.OrcOutputWriter.wrap(OrcRelation.scala:66)
	at org.apache.spark.sql.hive.orc.OrcOutputWriter.wrapOrcStruct(OrcRelation.scala:128)
	at org.apache.spark.sql.hive.orc.OrcOutputWriter.writeInternal(OrcRelation.scala:139)
	at org.apache.spark.sql.execution.datasources.DefaultWriterContainer.writeRows(WriterContainer.scala:264)
	... 8 more

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        Issue Links

          is related to

          Bug - A problem which impairs or prevents the functions of the product. SPARK-22320 ORC should support VectorUDT/MatrixUDT

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Resolved
          links to

          Pull request #15361 [Github] Pull Request #15361 (HyukjinKwon)

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              gurwls223 Hyukjin Kwon
              kxepal Alexander Shorin
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              Dates

                Created:
                Updated:
                Resolved: