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  1. HBase
  2. HBASE-15295

MutateTableAccess.multiMutate() does not get high priority causing a deadlock

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    Details

    • Type: Bug
    • Status: Resolved
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 1.3.0, 1.2.1, 1.1.5, 2.0.0
    • Component/s: None
    • Labels:
      None
    • Hadoop Flags:
      Reviewed

      Description

      We have seen this in a cluster with Phoenix secondary indexes leading to a deadlock. All handlers are busy waiting on the index updates to finish:

      "B.defaultRpcServer.handler=50,queue=0,port=16020" #91 daemon prio=5 os_prio=0 tid=0x00007f29f64ba000 nid=0xab51 waiting on condition [0x00007f29a8762000]
         java.lang.Thread.State: WAITING (parking)
      	at sun.misc.Unsafe.park(Native Method)
      	- parking to wait for  <0x0000000124f1d5c8> (a com.google.common.util.concurrent.AbstractFuture$Sync)
      	at java.util.concurrent.locks.LockSupport.park(LockSupport.java:175)
      	at java.util.concurrent.locks.AbstractQueuedSynchronizer.parkAndCheckInterrupt(AbstractQueuedSynchronizer.java:836)
      	at java.util.concurrent.locks.AbstractQueuedSynchronizer.doAcquireSharedInterruptibly(AbstractQueuedSynchronizer.java:997)
      	at java.util.concurrent.locks.AbstractQueuedSynchronizer.acquireSharedInterruptibly(AbstractQueuedSynchronizer.java:1304)
      	at com.google.common.util.concurrent.AbstractFuture$Sync.get(AbstractFuture.java:275)
      	at com.google.common.util.concurrent.AbstractFuture.get(AbstractFuture.java:111)
      	at org.apache.phoenix.hbase.index.parallel.BaseTaskRunner.submit(BaseTaskRunner.java:66)
      	at org.apache.phoenix.hbase.index.parallel.BaseTaskRunner.submitUninterruptible(BaseTaskRunner.java:99)
      	at org.apache.phoenix.hbase.index.write.ParallelWriterIndexCommitter.write(ParallelWriterIndexCommitter.java:194)
      	at org.apache.phoenix.hbase.index.write.IndexWriter.write(IndexWriter.java:179)
      	at org.apache.phoenix.hbase.index.write.IndexWriter.writeAndKillYourselfOnFailure(IndexWriter.java:144)
      	at org.apache.phoenix.hbase.index.write.IndexWriter.writeAndKillYourselfOnFailure(IndexWriter.java:134)
      	at org.apache.phoenix.hbase.index.Indexer.doPostWithExceptions(Indexer.java:457)
      	at org.apache.phoenix.hbase.index.Indexer.doPost(Indexer.java:406)
      	at org.apache.phoenix.hbase.index.Indexer.postBatchMutate(Indexer.java:401)
      	at org.apache.hadoop.hbase.regionserver.RegionCoprocessorHost$36.call(RegionCoprocessorHost.java:1006)
      	at org.apache.hadoop.hbase.regionserver.RegionCoprocessorHost$RegionOperation.call(RegionCoprocessorHost.java:1673)
      	at org.apache.hadoop.hbase.regionserver.RegionCoprocessorHost.execOperation(RegionCoprocessorHost.java:1748)
      	at org.apache.hadoop.hbase.regionserver.RegionCoprocessorHost.execOperation(RegionCoprocessorHost.java:1705)
      	at org.apache.hadoop.hbase.regionserver.RegionCoprocessorHost.postBatchMutate(RegionCoprocessorHost.java:1002)
      	at org.apache.hadoop.hbase.regionserver.HRegion.doMiniBatchMutation(HRegion.java:3162)
      	at org.apache.hadoop.hbase.regionserver.HRegion.batchMutate(HRegion.java:2801)
      	at org.apache.hadoop.hbase.regionserver.HRegion.batchMutate(HRegion.java:2743)
      	at org.apache.hadoop.hbase.regionserver.RSRpcServices.doBatchOp(RSRpcServices.java:692)
      	at org.apache.hadoop.hbase.regionserver.RSRpcServices.doNonAtomicRegionMutation(RSRpcServices.java:654)
      	at org.apache.hadoop.hbase.regionserver.RSRpcServices.multi(RSRpcServices.java:2031)
      	at org.apache.hadoop.hbase.protobuf.generated.ClientProtos$ClientService$2.callBlockingMethod(ClientProtos.java:32213)
      	at org.apache.hadoop.hbase.ipc.RpcServer.call(RpcServer.java:2114)
      	at org.apache.hadoop.hbase.ipc.CallRunner.run(CallRunner.java:101)
      	at org.apache.hadoop.hbase.ipc.RpcExecutor.consumerLoop(RpcExecutor.java:130)
      	at org.apache.hadoop.hbase.ipc.RpcExecutor$1.run(RpcExecutor.java:107)
      	at java.lang.Thread.run(Thread.java:745)
      

      And the index region is trying to split, and is trying to do a meta update:

      "regionserver/<hostaname>/10.132.70.191:16020-splits-1454693389669" #1779 prio=5 os_prio=0 tid=0x00007f29e149c000 nid=0x5107 in Object.wait() [0x00007f1f136d6000]
         java.lang.Thread.State: TIMED_WAITING (on object monitor)
              at java.lang.Object.wait(Native Method)
              at org.apache.hadoop.hbase.ipc.RpcClientImpl.call(RpcClientImpl.java:1215)
              - locked <0x000000010b72bc20> (a org.apache.hadoop.hbase.ipc.Call)
              at org.apache.hadoop.hbase.ipc.AbstractRpcClient.callBlockingMethod(AbstractRpcClient.java:213)
              at org.apache.hadoop.hbase.ipc.AbstractRpcClient$BlockingRpcChannelImplementation.callBlockingMethod(AbstractRpcClient.java:287)
              at org.apache.hadoop.hbase.protobuf.generated.ClientProtos$ClientService$BlockingStub.execService(ClientProtos.java:32675)
              at org.apache.hadoop.hbase.protobuf.ProtobufUtil.execService(ProtobufUtil.java:1618)
              at org.apache.hadoop.hbase.ipc.RegionCoprocessorRpcChannel$1.call(RegionCoprocessorRpcChannel.java:92)
              at org.apache.hadoop.hbase.ipc.RegionCoprocessorRpcChannel$1.call(RegionCoprocessorRpcChannel.java:89)
              at org.apache.hadoop.hbase.client.RpcRetryingCaller.callWithRetries(RpcRetryingCaller.java:126)
              at org.apache.hadoop.hbase.ipc.RegionCoprocessorRpcChannel.callExecService(RegionCoprocessorRpcChannel.java:95)
              at org.apache.hadoop.hbase.ipc.CoprocessorRpcChannel.callBlockingMethod(CoprocessorRpcChannel.java:73)
              at org.apache.hadoop.hbase.protobuf.generated.MultiRowMutationProtos$MultiRowMutationService$BlockingStub.mutateRows(MultiRowMutationProtos.java:2149)
              at org.apache.hadoop.hbase.MetaTableAccessor.multiMutate(MetaTableAccessor.java:1339)
              at org.apache.hadoop.hbase.MetaTableAccessor.splitRegion(MetaTableAccessor.java:1309)
              at org.apache.hadoop.hbase.regionserver.SplitTransactionImpl.createDaughters(SplitTransactionImpl.java:296)
              at org.apache.hadoop.hbase.regionserver.SplitTransactionImpl.execute(SplitTransactionImpl.java:509)
              at org.apache.hadoop.hbase.regionserver.SplitRequest.run(SplitRequest.java:85)
              at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
              at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
      

      The issue is that the RPC to the meta is using a coprocessor endpoint, thus does not get a high priority from AnnotationReadingPriorityFunction. Because of this, a deadlock happens because all handlers are already busy waiting on the index updates.

        Attachments

        1. hbase-15295_v6.patch
          182 kB
          Enis Soztutar
        2. hbase-15295_v6.patch
          182 kB
          Enis Soztutar
        3. hbase-15295_v5.patch
          184 kB
          Enis Soztutar
        4. hbase-15295_v5.patch
          184 kB
          Enis Soztutar
        5. hbase-15295_v4.patch
          184 kB
          Enis Soztutar
        6. hbase-15295_v3.patch
          182 kB
          Enis Soztutar
        7. hbase-15295_v2.patch
          167 kB
          Enis Soztutar
        8. hbase-15295_v1.patch
          130 kB
          Enis Soztutar
        9. hbase-15295_v1.patch
          130 kB
          Enis Soztutar
        10. hbase-15295_addendum.patch
          0.9 kB
          Enis Soztutar

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              • Assignee:
                enis Enis Soztutar
                Reporter:
                enis Enis Soztutar
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                Dates

                • Created:
                  Updated:
                  Resolved: