[CTAKES-552] Problems with sno_rx_16ab.xml after patch application

• Type: Bug
• Status: Closed
• Priority: Major
• Resolution: Cannot Reproduce
• Affects Version/s: 4.0.0.1
• Fix Version/s: 4.0.0.1
• Component/s: ctakes-dictionary-lookup
• Environment: Windows 10
• Assignee: Unassigned
• Reporter: Kyle Rasku
• Created: 22/Jan/21 22:06
• Updated: 26/Jan/21 01:57
• Resolved: 26/Jan/21 01:57

Description

Hello All,
 
Attempted to download and install the patch version on Windows 10 today.  
 
I tried to run ClinicalPipeline with my API Key (which I have already validated via the UMLS API test site):
 
bin\runClinicalPipeline i C:\Input\MyNotes\ --xmiOut C:\Output\MyNotes\ -key 00a111b3-4c55-5555-5d66-66e7f888ghij

where{{ 00a111b3-4c55-5555-5d66-66e7f888ghij}} is my Key.
 
Got:
 
(With just install of 4.0.0.1)
 
22 Jan 2021 17:00:07 ERROR FileLocator - Could not find org/apache/ctakes/dictionary/lookup/fast/sno_rx_16ab.xml as absolute or in $CLASSPATH :
 
(After attempting to xcopy the 4.0 SourceForge resources directory and re-run)
 
22 Jan 2021 16:43:57  INFO AbstractJCasTermAnnotator - Using Dictionary Descriptor: org/apache/ctakes/dictionary/lookup/fast/sno_rx_16ab.xml22 Jan 2021 16:43:57  INFO DictionaryDescriptorParser - Parsing dictionary specifications:
22 Jan 2021 16:43:57  INFO UmlsUserApprover - Checking UMLS Account at https://utslogin.nlm.nih.gov/cas/v1/api-key:
...
22 Jan 2021 16:43:58 ERROR UmlsUserApprover - Server returned HTTP response code: 401 for URL: https://utslogin.nlm.nih.gov/cas/v1/api-key22 Jan 2021 16:43:58 ERROR PiperFileRunner - Initialization of annotator class "org.apache.ctakes.dictionary.lookup2.ae.DefaultJCasTermAnnotator" failed.  (Descriptor: <unknown>)
 
Does anyone please know how to fix this? 
Is there something in the file I can modify to make it work?
 
Thank you so much.
Kylie