[CTAKES-156] java.io.FileNotFoundException: lookup/rxnorm_index when using DictionaryLookupAnnotator_sideEffectUMLS.xml

• Type: Bug
• Status: Resolved
• Priority: Major
• Resolution: Fixed
• Affects Version/s: 3.0-incubating, 3.1.0
• Fix Version/s: 3.1.0
• Component/s: ctakes-side-effect
• Assignee: Unassigned
• Reporter: James Joseph Masanz
• Created: 08/Feb/13 20:19
• Updated: 27/Aug/13 19:01
• Resolved: 27/Aug/13 16:42

Description

Using RC7 of 3.0.0-incubating:

2/8/13 2:10:15 PM - 10: org.apache.uima.tools.cvd.MainFrame.handleException(527): SEVERE: Exception occurred
org.apache.uima.resource.ResourceInitializationException
at org.apache.ctakes.core.resource.LuceneIndexReaderResourceImpl.load(LuceneIndexReaderResourceImpl.java:79)

Caused by: java.io.FileNotFoundException: lookup/rxnorm_index
at org.apache.ctakes.core.resource.FileLocator.locateExplicitly(FileLocator.java:69)
at org.apache.ctakes.core.resource.FileLocator.locateFile(FileLocator.java:44)
at org.apache.ctakes.core.resource.LuceneIndexReaderResourceImpl.load(LuceneIndexReaderResourceImpl.java:57)
... 59 more

DictionaryLookupAnnotator_sideEffectUMLS.xml contains this line
<string>lookup/rxnorm_index</string>
whereas DictionaryLookupAnnotator_sideEffect.xml contains this line
<string>org/apache/ctakes/dictionary/lookup/drug_index</string>

Personally I don't think this is severe enough to hold up the release of 3.0.0, but if we have to create a new RC for some other reason, should consider adding it to the next RC