Uploaded image for project: 'Bigtop'
  1. Bigtop
  2. BIGTOP-3540

Fix toolchain to abort if R installation failed

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    Details

    • Type: Bug
    • Status: Resolved
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 3.0.0
    • Component/s: build, spark
    • Labels:
      None

      Description

      Building Spark is failing on CentOS 7 due to the lack of the knitr library.
      https://ci.bigtop.apache.org/view/Packages/job/Bigtop-trunk-packages/701/COMPONENTS=spark,OS=centos-7/console

      Error in loadVignetteBuilder(pkgdir, TRUE) : 
      * checking DESCRIPTION meta-information ... OK
      
      
      RPM build errors:
        vignette builder 'knitr' not found
      Execution halted
      error: Bad exit status from /var/tmp/rpm-tmp.PfHp35 (%build)
          Bad exit status from /var/tmp/rpm-tmp.PfHp35 (%build)
      
      > Task :spark-rpm FAILED
      

      The Docker image in question was built without any errors:
      https://ci.bigtop.apache.org/view/Docker/job/Docker-Toolchain-Trunk/OS=centos-7/167/console

      Notice: /Stage[main]/Bigtop_toolchain::Renv/Package[pandoc]/ensure: created
      Notice: /Stage[main]/Bigtop_toolchain::Renv/Package[R-devel]/ensure: created
      Notice: /Stage[main]/Bigtop_toolchain::Renv/Package[R]/ensure: created
      Notice: /Stage[main]/Bigtop_toolchain::Renv/Exec[install_r_packages]/returns: executed successfully
      Notice: /Stage[main]/Bigtop_toolchain::Protobuf/File[/usr/src/0001-Backport-atomic-operations-with-support-of-arm64-and.patch]/ensure: defined content as '{md5}1c62663f215f577fa07a22f5860eef53'
      Notice: /Stage[main]/Bigtop_toolchain::Protobuf/Exec[download protobuf]/returns: executed successfully
      Notice: /Stage[main]/Bigtop_toolchain::Protobuf/Exec[install protobuf]/returns: executed successfully
      Notice: /Stage[last]/Bigtop_toolchain::Cleanup/Exec[clean packages]/returns: executed successfully
      Notice: /Stage[last]/Bigtop_toolchain::Cleanup/Exec[remove archives]/returns: executed successfully
      Notice: Finished catalog run in 716.17 seconds
      
      ...
      
      BUILD SUCCESSFUL in 17s
      1 actionable task: 1 executed
      Removing intermediate container 7f0ae430745e
       ---> 5a2c5cd62ee4
      Successfully built 5a2c5cd62ee4
      Successfully tagged bigtop/slaves:trunk-centos-7
      + rm -f Dockerfile
      
      BUILD SUCCESSFUL in 13m 18s
      1 actionable task: 1 executed
      + docker push bigtop/slaves:trunk-centos-7
      
      ...
      
      trunk-centos-7: digest: sha256:e8ee97d9d799e0b206b0ffbdc1a846ca19d242d3b762ba7b50099ce6c062fd8e size: 1796
      Finished: SUCCESS
      

      But it actually doesn't have knitr for some reason.

      $ docker pull bigtop/slaves:trunk-centos-7
      trunk-centos-7: Pulling from bigtop/slaves
      Digest: sha256:e8ee97d9d799e0b206b0ffbdc1a846ca19d242d3b762ba7b50099ce6c062fd8e
      Status: Image is up to date for bigtop/slaves:trunk-centos-7
      docker.io/bigtop/slaves:trunk-centos-7
      $ docker run -it bigtop/slaves:trunk-centos-7 Rscript -e 'library(knitr)'
      Error in library(knitr) : there is no package called 'knitr'
      Execution halted
      

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            • Assignee:
              sekikn Kengo Seki
              Reporter:
              sekikn Kengo Seki
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                Updated:
                Resolved:

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