Details
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Bug
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Status: Resolved
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Major
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Resolution: Fixed
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None
Description
I've tried to install / build from source (with from a git checkout and using the built-in `install_arrow()`) and when compiling I'm getting the following error reliably during the auto brew process:
x System command 'R' failed, exit status: 1, stdout + stderr: E> * checking for file ‘/Users/jkeane/Dropbox/arrow/r/DESCRIPTION’ ... OK E> * preparing ‘arrow’: E> * checking DESCRIPTION meta-information ... OK E> * cleaning src E> * running ‘cleanup’ E> * installing the package to build vignettes E> ----------------------------------- E> * installing *source* package ‘arrow’ ... E> ** using staged installation E> *** Generating code with data-raw/codegen.R E> There were 27 warnings (use warnings() to see them) E> *** > 375 functions decorated with [[arrow|s3::export]] E> *** > generated file `src/arrowExports.cpp` E> *** > generated file `R/arrowExports.R` E> *** Downloading apache-arrow E> **** Using local manifest for apache-arrow E> Thu May 7 13:13:42 CDT 2020: Auto-brewing apache-arrow in /var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T//build-apache-arrow... E> ==> Tapping autobrew/core from https://github.com/autobrew/homebrew-core E> Tapped 2 commands and 4639 formulae (4,888 files, 12.7MB). E> lz4 E> openssl E> thrift E> snappy E> ==> Downloading https://homebrew.bintray.com/bottles/lz4-1.8.3.mojave.bottle.tar.gz E> Already downloaded: /var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T/downloads/b4158ef68d619dbf78935df6a42a70b8339a65bc8876cbb4446355ccd40fa5de--lz4-1.8.3.mojave.bottle.tar.gz E> ==> Pouring lz4-1.8.3.mojave.bottle.tar.gz E> ==> Skipping post_install step for autobrew... E> 🍺 /private/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T/build-apache-arrow/Cellar/lz4/1.8.3: 22 files, 512.7KB E> ==> Downloading https://homebrew.bintray.com/bottles/openssl-1.0.2p.mojave.bottle.tar.gz E> Already downloaded: /var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T/downloads/fbb493745981c8b26c0fab115c76c2a70142bfde9e776c450277e9dfbbba0bb2--openssl-1.0.2p.mojave.bottle.tar.gz E> ==> Pouring openssl-1.0.2p.mojave.bottle.tar.gz E> ==> Skipping post_install step for autobrew... E> ==> Caveats E> openssl is keg-only, which means it was not symlinked into /private/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T/build-apache-arrow, E> because Apple has deprecated use of OpenSSL in favor of its own TLS and crypto libraries. E> E> If you need to have openssl first in your PATH run: E> echo 'export PATH="/private/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T/build-apache-arrow/opt/openssl/bin:$PATH"' >> ~/.zshrc E> E> For compilers to find openssl you may need to set: E> export LDFLAGS="-L/private/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T/build-apache-arrow/opt/openssl/lib" E> export CPPFLAGS="-I/private/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T/build-apache-arrow/opt/openssl/include" E> E> For pkg-config to find openssl you may need to set: E> export PKG_CONFIG_PATH="/private/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T/build-apache-arrow/opt/openssl/lib/pkgconfig" E> E> ==> Summary E> 🍺 /private/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T/build-apache-arrow/Cellar/openssl/1.0.2p: 1,793 files, 12MB E> ==> Downloading https://homebrew.bintray.com/bottles/thrift-0.11.0.mojave.bottle.tar.gz E> Already downloaded: /var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T/downloads/7e05ea11a9f7f924dd7f8f36252ec73a24958b7f214f71e3752a355e75e589bd--thrift-0.11.0.mojave.bottle.tar.gz E> ==> Pouring thrift-0.11.0.mojave.bottle.tar.gz E> ==> Skipping post_install step for autobrew... E> ==> Caveats E> To install Ruby binding: E> gem install thrift E> ==> Summary E> 🍺 /private/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T/build-apache-arrow/Cellar/thrift/0.11.0: 102 files, 7MB E> ==> Downloading https://homebrew.bintray.com/bottles/snappy-1.1.7_1.mojave.bottle.tar.gz E> Already downloaded: /var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T/downloads/1f09938804055499d1dd951b13b26d80c56eae359aa051284bf4f51d109a9f73--snappy-1.1.7_1.mojave.bottle.tar.gz E> ==> Pouring snappy-1.1.7_1.mojave.bottle.tar.gz E> ==> Skipping post_install step for autobrew... E> 🍺 /private/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T/build-apache-arrow/Cellar/snappy/1.1.7_1: 18 files, 115.8KB E> ==> Downloading https://autobrew.github.io/bottles/apache-arrow-0.17.0.el_capitan.bottle.tar.gz E> Already downloaded: /var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T/downloads/7dcf2302ba174a5efb32eaa5b8fe0ae874f4a4671f575e126c79a524830054ae--apache-arrow-0.17.0.el_capitan.bottle.tar.gz E> ==> Pouring apache-arrow-0.17.0.el_capitan.bottle.tar.gz E> ==> Skipping post_install step for autobrew... E> 🍺 /private/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T/build-apache-arrow/Cellar/apache-arrow/0.17.0: 294 files, 49.7MB E> ==> Caveats E> ==> openssl E> openssl is keg-only, which means it was not symlinked into /private/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T/build-apache-arrow, E> because Apple has deprecated use of OpenSSL in favor of its own TLS and crypto libraries. E> E> If you need to have openssl first in your PATH run: E> echo 'export PATH="/private/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T/build-apache-arrow/opt/openssl/bin:$PATH"' >> ~/.zshrc E> E> For compilers to find openssl you may need to set: E> export LDFLAGS="-L/private/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T/build-apache-arrow/opt/openssl/lib" E> export CPPFLAGS="-I/private/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T/build-apache-arrow/opt/openssl/include" E> E> For pkg-config to find openssl you may need to set: E> export PKG_CONFIG_PATH="/private/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T/build-apache-arrow/opt/openssl/lib/pkgconfig" E> E> ==> thrift E> To install Ruby binding: E> gem install thrift E> created /var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T//build-apache-arrow/lib/libbrewarrow.a E> created /var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T//build-apache-arrow/lib/libbrewarrow_dataset.a E> created /var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T//build-apache-arrow/lib/libbrewparquet.a E> created /var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T//build-apache-arrow/lib/libbrewlz4.a E> created /var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T//build-apache-arrow/lib/libbrewcrypto.a E> created /var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T//build-apache-arrow/lib/libbrewssl.a E> created /var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T//build-apache-arrow/lib/libbrewsnappy.a E> created /var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T//build-apache-arrow/lib/libbrewthrift.a E> created /var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T//build-apache-arrow/lib/libbrewthriftz.a E> PKG_CFLAGS=-I/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T//build-apache-arrow/opt/apache-arrow/include -DARROW_R_WITH_ARROW E> PKG_LIBS=-L/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T//build-apache-arrow/opt/apache-arrow/lib -L/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T//build-apache-arrow/lib -lbrewparquet -lbrewarrow_dataset -lbrewarrow -lbrewthrift -lbrewlz4 -lbrewsnappy E> ** libs E> clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T//build-apache-arrow/opt/apache-arrow/include -DARROW_R_WITH_ARROW -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I/usr/local/include -fPIC -Wall -g -O2 -c array.cpp -o array.o E> clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T//build-apache-arrow/opt/apache-arrow/include -DARROW_R_WITH_ARROW -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I/usr/local/include -fPIC -Wall -g -O2 -c array_from_vector.cpp -o array_from_vector.o E> clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T//build-apache-arrow/opt/apache-arrow/include -DARROW_R_WITH_ARROW -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I/usr/local/include -fPIC -Wall -g -O2 -c array_to_vector.cpp -o array_to_vector.o E> clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T//build-apache-arrow/opt/apache-arrow/include -DARROW_R_WITH_ARROW -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I/usr/local/include -fPIC -Wall -g -O2 -c arraydata.cpp -o arraydata.o E> clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T//build-apache-arrow/opt/apache-arrow/include -DARROW_R_WITH_ARROW -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I/usr/local/include -fPIC -Wall -g -O2 -c arrowExports.cpp -o arrowExports.o E> arrowExports.cpp:1650:21: error: no member named 'CsvFileFormat' in namespace 'arrow::dataset' E> std::shared_ptr<ds::CsvFileFormat> dataset___CsvFileFormat__Make(const std::shared_ptr<arrow::csv::ParseOptions>& parse_options); E> ~~~~^ E> 1 error generated. E> make: *** [arrowExports.o] Error 1 E> ERROR: compilation failed for package ‘arrow’ E> * removing ‘/private/var/folders/45/n5gfjjtn05j877spnpbnhqqw0000gn/T/RtmpNwJEKk/Rinstd9644c71dcbf/arrow’ E> ----------------------------------- E> ERROR: package installation failed
I'm sure I'm missing some setup step somewhere or I'm missing a necessary step to install from source. I've tried this both under R 3.6(.1) and 4.0 to see if upgrading helped and I get the same error
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