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  1. Apache Arrow
  2. ARROW-8586

[R] installation failure on CentOS 7

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    Details

    • Type: Bug
    • Status: Resolved
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: 0.17.0
    • Fix Version/s: 1.0.0
    • Component/s: R
    • Environment:
      CentOS 7

      Description

      Hi,

      I am trying to install arrow via RStudio, but it seems like it is not working that after I installed the package, it kept asking me to run arrow::install_arrow() even after I did:

      > install.packages("arrow")
      Installing package into ‘/home/hc/R/x86_64-redhat-linux-gnu-library/3.6’
      (as ‘lib’ is unspecified)
      trying URL 'https://cran.rstudio.com/src/contrib/arrow_0.17.0.tar.gz'
      Content type 'application/x-gzip' length 242534 bytes (236 KB)
      ==================================================
      downloaded 236 KB
      
      * installing *source* package ‘arrow’ ...
      ** package ‘arrow’ successfully unpacked and MD5 sums checked
      ** using staged installation
      *** Successfully retrieved C++ source
      *** Building C++ libraries
      **** cmake
      **** arrow  
      ./configure: line 132: cd: libarrow/arrow-0.17.0/lib: Not a directory
      ------------------------- NOTE ---------------------------
      After installation, please run arrow::install_arrow()
      for help installing required runtime libraries
      ---------------------------------------------------------
      ** libs
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c array.cpp -o array.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c array_from_vector.cpp -o array_from_vector.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c array_to_vector.cpp -o array_to_vector.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c arraydata.cpp -o arraydata.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c arrowExports.cpp -o arrowExports.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c buffer.cpp -o buffer.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c chunkedarray.cpp -o chunkedarray.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c compression.cpp -o compression.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c compute.cpp -o compute.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c csv.cpp -o csv.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c dataset.cpp -o dataset.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c datatype.cpp -o datatype.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c expression.cpp -o expression.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c feather.cpp -o feather.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c field.cpp -o field.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c filesystem.cpp -o filesystem.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c io.cpp -o io.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c json.cpp -o json.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c memorypool.cpp -o memorypool.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c message.cpp -o message.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c parquet.cpp -o parquet.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c py-to-r.cpp -o py-to-r.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c recordbatch.cpp -o recordbatch.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c recordbatchreader.cpp -o recordbatchreader.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c recordbatchwriter.cpp -o recordbatchwriter.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c schema.cpp -o schema.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c symbols.cpp -o symbols.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c table.cpp -o table.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c threadpool.cpp -o threadpool.o
      g++ -m64 -std=gnu++11 -shared -L/usr/lib64/R/lib -Wl,-z,relro -o arrow.so array.o array_from_vector.o array_to_vector.o arraydata.o arrowExports.o buffer.o chunkedarray.o compression.o compute.o csv.o dataset.o datatype.o expression.o feather.o field.o filesystem.o io.o json.o memorypool.o message.o parquet.o py-to-r.o recordbatch.o recordbatchreader.o recordbatchwriter.o schema.o symbols.o table.o threadpool.o -L/usr/lib64/R/lib -lR
      installing to /home/hc/R/x86_64-redhat-linux-gnu-library/3.6/00LOCK-arrow/00new/arrow/libs
      ** R
      ** inst
      ** byte-compile and prepare package for lazy loading
      ** help
      *** installing help indices
        converting help for package ‘arrow’
          finding HTML links ... done
          ArrayData                               html  
          ChunkedArray                            html  
          Codec                                   html  
          CsvReadOptions                          html  
      Rd warning: /tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/CsvReadOptions.Rd:61: file link ‘read.csv’ in package ‘utils’ does not exist and so has been treated as a topic
          CsvTableReader                          html  
          DataType                                html  
          Dataset                                 html  
          DictionaryType                          html  
          Expression                              html  
          FeatherReader                           html  
          Field                                   html  
          FileFormat                              html  
          FileInfo                                html  
          FileSelector                            html  
          FileSystem                              html  
          FixedWidthType                          html  
          InputStream                             html  
          MemoryPool                              html  
          Message                                 html  
          MessageReader                           html  
          OutputStream                            html  
          ParquetFileReader                       html  
          ParquetFileWriter                       html  
          ParquetReaderProperties                 html  
          ParquetWriterProperties                 html  
          Partitioning                            html  
          RecordBatch                             html  
          RecordBatchReader                       html  
          RecordBatchWriter                       html  
          Scanner                                 html  
          Schema                                  html  
          Table                                   html  
          array                                   html  
          arrow-package                           html  
          arrow_available                         html  
          buffer                                  html  
          cast_options                            html  
          codec_is_available                      html  
          compression                             html  
          cpu_count                               html  
          data-type                               html  
          dataset_factory                         html  
          default_memory_pool                     html  
          dictionary                              html  
          enums                                   html  
          hive_partition                          html  
          install_arrow                           html  
          install_pyarrow                         html  
          make_readable_file                      html  
          map_batches                             html  
          mmap_create                             html  
          mmap_open                               html  
          open_dataset                            html  
          read_delim_arrow                        html  
          read_feather                            html  
          read_ipc_stream                         html  
          read_json_arrow                         html  
          read_message                            html  
          read_parquet                            html  
          read_record_batch                       html  
          read_schema                             html  
          reexports                               html  
      Rd warning: /tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/reexports.Rd:24: file link ‘print.integer64’ in package ‘bit64’ does not exist and so has been treated as a topic
      Rd warning: /tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/reexports.Rd:24: file link ‘str.integer64’ in package ‘bit64’ does not exist and so has been treated as a topic
      Rd warning: /tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/reexports.Rd:26: file link ‘contains’ in package ‘tidyselect’ does not exist and so has been treated as a topic
      Rd warning: /tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/reexports.Rd:26: file link ‘ends_with’ in package ‘tidyselect’ does not exist and so has been treated as a topic
      Rd warning: /tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/reexports.Rd:26: file link ‘everything’ in package ‘tidyselect’ does not exist and so has been treated as a topic
      Rd warning: /tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/reexports.Rd:26: file link ‘last_col’ in package ‘tidyselect’ does not exist and so has been treated as a topic
      Rd warning: /tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/reexports.Rd:26: file link ‘matches’ in package ‘tidyselect’ does not exist and so has been treated as a topic
      Rd warning: /tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/reexports.Rd:26: file link ‘num_range’ in package ‘tidyselect’ does not exist and so has been treated as a topic
      Rd warning: /tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/reexports.Rd:26: file link ‘starts_with’ in package ‘tidyselect’ does not exist and so has been treated as a topic
          type                                    html  
          unify_schemas                           html  
          write_feather                           html  
          write_ipc_stream                        html  
          write_parquet                           html  
          write_to_raw                            html  
      ** building package indices
      ** installing vignettes
      ** testing if installed package can be loaded from temporary location
      ** checking absolute paths in shared objects and dynamic libraries
      ** testing if installed package can be loaded from final location
      ** testing if installed package keeps a record of temporary installation path
      * DONE (arrow)
      
      The downloaded source packages are in
      	‘/tmp/Rtmpo9otzy/downloaded_packages’
      > library(arrow)
      
      Attaching package: ‘arrow’
      
      The following object is masked from ‘package:utils’:
      
          timestamp
      
      > df <- read_parquet('/home/hc/my.10.level.20200331.2book.parquet')
      Error in io___MemoryMappedFile__Open(path, mode) : 
        Cannot call io___MemoryMappedFile__Open(). Please use arrow::install_arrow() to install required runtime libraries. 
      > arrow::install_arrow()
      Installing package into ‘/home/hc/R/x86_64-redhat-linux-gnu-library/3.6’
      (as ‘lib’ is unspecified)
      trying URL 'https://cran.rstudio.com/src/contrib/arrow_0.17.0.tar.gz'
      Content type 'application/x-gzip' length 242534 bytes (236 KB)
      ==================================================
      downloaded 236 KB
      
      * installing *source* package ‘arrow’ ...
      ** package ‘arrow’ successfully unpacked and MD5 sums checked
      ** using staged installation
      *** No C++ binaries found for centos-7.7.1908
      *** Successfully retrieved C++ source
      *** Building C++ libraries
      **** cmake
      **** arrow  
      ./configure: line 132: cd: libarrow/arrow-0.17.0/lib: Not a directory
      ------------------------- NOTE ---------------------------
      After installation, please run arrow::install_arrow()
      for help installing required runtime libraries
      ---------------------------------------------------------
      ** libs
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c array.cpp -o array.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c array_from_vector.cpp -o array_from_vector.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c array_to_vector.cpp -o array_to_vector.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c arraydata.cpp -o arraydata.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c arrowExports.cpp -o arrowExports.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c buffer.cpp -o buffer.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c chunkedarray.cpp -o chunkedarray.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c compression.cpp -o compression.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c compute.cpp -o compute.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c csv.cpp -o csv.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c dataset.cpp -o dataset.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c datatype.cpp -o datatype.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c expression.cpp -o expression.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c feather.cpp -o feather.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c field.cpp -o field.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c filesystem.cpp -o filesystem.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c io.cpp -o io.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c json.cpp -o json.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c memorypool.cpp -o memorypool.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c message.cpp -o message.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c parquet.cpp -o parquet.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c py-to-r.cpp -o py-to-r.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c recordbatch.cpp -o recordbatch.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c recordbatchreader.cpp -o recordbatchreader.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c recordbatchwriter.cpp -o recordbatchwriter.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c schema.cpp -o schema.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c symbols.cpp -o symbols.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c table.cpp -o table.o
      g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -c threadpool.cpp -o threadpool.o
      g++ -m64 -std=gnu++11 -shared -L/usr/lib64/R/lib -Wl,-z,relro -o arrow.so array.o array_from_vector.o array_to_vector.o arraydata.o arrowExports.o buffer.o chunkedarray.o compression.o compute.o csv.o dataset.o datatype.o expression.o feather.o field.o filesystem.o io.o json.o memorypool.o message.o parquet.o py-to-r.o recordbatch.o recordbatchreader.o recordbatchwriter.o schema.o symbols.o table.o threadpool.o -L/usr/lib64/R/lib -lR
      installing to /home/hc/R/x86_64-redhat-linux-gnu-library/3.6/00LOCK-arrow/00new/arrow/libs
      ** R
      ** inst
      ** byte-compile and prepare package for lazy loading
      ** help
      *** installing help indices
        converting help for package ‘arrow’
          finding HTML links ... done
          ArrayData                               html  
          ChunkedArray                            html  
          Codec                                   html  
          CsvReadOptions                          html  
      Rd warning: /tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/CsvReadOptions.Rd:61: file link ‘read.csv’ in package ‘utils’ does not exist and so has been treated as a topic
          CsvTableReader                          html  
          DataType                                html  
          Dataset                                 html  
          DictionaryType                          html  
          Expression                              html  
          FeatherReader                           html  
          Field                                   html  
          FileFormat                              html  
          FileInfo                                html  
          FileSelector                            html  
          FileSystem                              html  
          FixedWidthType                          html  
          InputStream                             html  
          MemoryPool                              html  
          Message                                 html  
          MessageReader                           html  
          OutputStream                            html  
          ParquetFileReader                       html  
          ParquetFileWriter                       html  
          ParquetReaderProperties                 html  
          ParquetWriterProperties                 html  
          Partitioning                            html  
          RecordBatch                             html  
          RecordBatchReader                       html  
          RecordBatchWriter                       html  
          Scanner                                 html  
          Schema                                  html  
          Table                                   html  
          array                                   html  
          arrow-package                           html  
          arrow_available                         html  
          buffer                                  html  
          cast_options                            html  
          codec_is_available                      html  
          compression                             html  
          cpu_count                               html  
          data-type                               html  
          dataset_factory                         html  
          default_memory_pool                     html  
          dictionary                              html  
          enums                                   html  
          hive_partition                          html  
          install_arrow                           html  
          install_pyarrow                         html  
          make_readable_file                      html  
          map_batches                             html  
          mmap_create                             html  
          mmap_open                               html  
          open_dataset                            html  
          read_delim_arrow                        html  
          read_feather                            html  
          read_ipc_stream                         html  
          read_json_arrow                         html  
          read_message                            html  
          read_parquet                            html  
          read_record_batch                       html  
          read_schema                             html  
          reexports                               html  
      Rd warning: /tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/reexports.Rd:24: file link ‘print.integer64’ in package ‘bit64’ does not exist and so has been treated as a topic
      Rd warning: /tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/reexports.Rd:24: file link ‘str.integer64’ in package ‘bit64’ does not exist and so has been treated as a topic
      Rd warning: /tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/reexports.Rd:26: file link ‘contains’ in package ‘tidyselect’ does not exist and so has been treated as a topic
      Rd warning: /tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/reexports.Rd:26: file link ‘ends_with’ in package ‘tidyselect’ does not exist and so has been treated as a topic
      Rd warning: /tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/reexports.Rd:26: file link ‘everything’ in package ‘tidyselect’ does not exist and so has been treated as a topic
      Rd warning: /tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/reexports.Rd:26: file link ‘last_col’ in package ‘tidyselect’ does not exist and so has been treated as a topic
      Rd warning: /tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/reexports.Rd:26: file link ‘matches’ in package ‘tidyselect’ does not exist and so has been treated as a topic
      Rd warning: /tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/reexports.Rd:26: file link ‘num_range’ in package ‘tidyselect’ does not exist and so has been treated as a topic
      Rd warning: /tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/reexports.Rd:26: file link ‘starts_with’ in package ‘tidyselect’ does not exist and so has been treated as a topic
          type                                    html  
          unify_schemas                           html  
          write_feather                           html  
          write_ipc_stream                        html  
          write_parquet                           html  
          write_to_raw                            html  
      ** building package indices
      ** installing vignettes
      ** testing if installed package can be loaded from temporary location
      ** checking absolute paths in shared objects and dynamic libraries
      ** testing if installed package can be loaded from final location
      ** testing if installed package keeps a record of temporary installation path
      * DONE (arrow)
      
      The downloaded source packages are in
      	‘/tmp/Rtmpo9otzy/downloaded_packages’
      Please restart R to use the 'arrow' package.
      
      Restarting R session...
      
      > library(arrow)
      
      Attaching package: ‘arrow’
      
      The following object is masked from ‘package:utils’:
      
          timestamp
      
      > read_parquet('/home/hc/my.10.level.20200331.1.book.parquet')
      Error in io___MemoryMappedFile__Open(path, mode) : 
        Cannot call io___MemoryMappedFile__Open(). Please use arrow::install_arrow() to install required runtime libraries. 
      > library(arrow)
      > df <- read_parquet('/home/hc/my.10.level.20200331.1.book.parquet')
      Error in io___MemoryMappedFile__Open(path, mode) : 
        Cannot call io___MemoryMappedFile__Open(). Please use arrow::install_arrow() to install required runtime libraries. 
      

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              • Assignee:
                npr Neal Richardson
                Reporter:
                Hei Hei
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