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  1. Apache Arrow
  2. ARROW-2657

Segfault when importing TensorFlow after Pyarrow

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      Description

      The following will segfault when pyarrow wheels are built using the instructions in https://github.com/apache/arrow/tree/master/python/manylinux1#build-instructions.

      import pyarrow
      import tensorflow
      

      Searching over commits, this was introduced in https://github.com/apache/arrow/commit/2093f6ec5c628ef983194a3fb3d0a621dd58c600.

      Running in gdb shows

      $ gdb python
      GNU gdb (Ubuntu 7.11.1-0ubuntu1~16.5) 7.11.1
      Copyright (C) 2016 Free Software Foundation, Inc.
      License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
      This is free software: you are free to change and redistribute it.
      There is NO WARRANTY, to the extent permitted by law. Type "show copying"
      and "show warranty" for details.
      This GDB was configured as "x86_64-linux-gnu".
      Type "show configuration" for configuration details.
      For bug reporting instructions, please see:
      <http://www.gnu.org/software/gdb/bugs/>.
      Find the GDB manual and other documentation resources online at:
      <http://www.gnu.org/software/gdb/documentation/>.
      For help, type "help".
      Type "apropos word" to search for commands related to "word"...
      Reading symbols from python...done.
      (gdb) run
      Starting program: /home/ubuntu/anaconda3/bin/python 
      [Thread debugging using libthread_db enabled]
      Using host libthread_db library "/lib/x86_64-linux-gnu/libthread_db.so.1".
      Python 3.6.5 |Anaconda, Inc.| (default, Apr 29 2018, 16:14:56) 
      [GCC 7.2.0] on linux
      Type "help", "copyright", "credits" or "license" for more information.
      >>> import pyarrow
      >>> import tensorflow
      
      Program received signal SIGSEGV, Segmentation fault.
      0x0000000000000000 in ?? ()
      (gdb) bt
      #0 0x0000000000000000 in ?? ()
      #1 0x00007ffff7bc8a99 in __pthread_once_slow (
       once_control=0x7fffd95561c8 <tensorflow::port::(anonymous namespace)::cpuid_once_flag>, init_routine=0x7ffff17e6fe1 <std::__once_proxy()>)
       at pthread_once.c:116
      #2 0x00007fffd8df6faa in void std::call_once<void (&)()>(std::once_flag&, void (&)()) ()
       from /home/ubuntu/anaconda3/lib/python3.6/site-packages/tensorflow/python/../libtensorflow_framework.so
      #3 0x00007fffd8df6fde in tensorflow::port::TestCPUFeature(tensorflow::port::CPUFeature) ()
       from /home/ubuntu/anaconda3/lib/python3.6/site-packages/tensorflow/python/../libtensorflow_framework.so
      #4 0x00007fffd8df6f11 in tensorflow::port::(anonymous namespace)::CheckFeatureOrDie(tensorflow::port::CPUFeature, std::string const&) ()
       from /home/ubuntu/anaconda3/lib/python3.6/site-packages/tensorflow/python/../libtensorflow_framework.so
      #5 0x00007fffd8c38394 in _GLOBAL__sub_I_cpu_feature_guard.cc ()
       from /home/ubuntu/anaconda3/lib/python3.6/site-packages/tensorflow/python/../libtensorflow_framework.so
      ---Type <return> to continue, or q <return> to quit---
      #6 0x00007ffff7de76ba in call_init (l=<optimized out>, argc=argc@entry=1, 
       argv=argv@entry=0x7fffffffe598, env=env@entry=0x555555c628f0)
       at dl-init.c:72
      #7 0x00007ffff7de77cb in call_init (env=0x555555c628f0, argv=0x7fffffffe598, 
       argc=1, l=<optimized out>) at dl-init.c:30
      #8 _dl_init (main_map=main_map@entry=0x5555565d9640, argc=1, 
       argv=0x7fffffffe598, env=0x555555c628f0) at dl-init.c:120
      #9 0x00007ffff7dec8e2 in dl_open_worker (a=a@entry=0x7fffffff8810)
       at dl-open.c:575
      #10 0x00007ffff7de7564 in _dl_catch_error (
       objname=objname@entry=0x7fffffff8800, 
       errstring=errstring@entry=0x7fffffff8808, 
       mallocedp=mallocedp@entry=0x7fffffff87ff, 
       operate=operate@entry=0x7ffff7dec4d0 <dl_open_worker>, 
       args=args@entry=0x7fffffff8810) at dl-error.c:187
      #11 0x00007ffff7debda9 in _dl_open (
       file=0x7fffde1edc00 "/home/ubuntu/anaconda3/lib/python3.6/site-packages/tensorflow/python/_pywrap_tensorflow_internal.so", mode=-2147483646, 
       caller_dlopen=0x555555742bfa <_PyImport_FindSharedFuncptr+138>, nsid=-2, 
       argc=<optimized out>, argv=<optimized out>, env=0x555555c628f0)
      ---Type <return> to continue, or q <return> to quit---
       at dl-open.c:660
      #12 0x00007ffff75ecf09 in dlopen_doit (a=a@entry=0x7fffffff8a40) at dlopen.c:66
      #13 0x00007ffff7de7564 in _dl_catch_error (objname=0x555555b35d00, 
       errstring=0x555555b35d08, mallocedp=0x555555b35cf8, 
       operate=0x7ffff75eceb0 <dlopen_doit>, args=0x7fffffff8a40)
       at dl-error.c:187
      #14 0x00007ffff75ed571 in _dlerror_run (
       operate=operate@entry=0x7ffff75eceb0 <dlopen_doit>, 
       args=args@entry=0x7fffffff8a40) at dlerror.c:163
      #15 0x00007ffff75ecfa1 in __dlopen (file=<optimized out>, mode=<optimized out>)
       at dlopen.c:87
      #16 0x0000555555742bfa in _PyImport_FindSharedFuncptr ()
      #17 0x00005555557698a0 in _PyImport_LoadDynamicModuleWithSpec ()
      #18 0x0000555555769ae5 in _imp_create_dynamic ()
      #19 0x0000555555665a61 in PyCFunction_Call ()
      #20 0x0000555555719fdb in _PyEval_EvalFrameDefault ()
      #21 0x00005555556eba94 in _PyEval_EvalCodeWithName ()
      #22 0x00005555556ec941 in fast_function ()
      #23 0x00005555556f2755 in call_function ()
      #24 0x0000555555714cba in _PyEval_EvalFrameDefault ()
      ---Type <return> to continue, or q <return> to quit---
      #25 0x00005555556ec70b in fast_function ()
      #26 0x00005555556f2755 in call_function ()
      #27 0x0000555555714cba in _PyEval_EvalFrameDefault ()
      #28 0x00005555556ec70b in fast_function ()
      #29 0x00005555556f2755 in call_function ()
      #30 0x0000555555714cba in _PyEval_EvalFrameDefault ()
      #31 0x00005555556ec70b in fast_function ()
      #32 0x00005555556f2755 in call_function ()
      #33 0x0000555555714cba in _PyEval_EvalFrameDefault ()
      #34 0x00005555556ec70b in fast_function ()
      #35 0x00005555556f2755 in call_function ()
      #36 0x0000555555714cba in _PyEval_EvalFrameDefault ()
      #37 0x00005555556eba94 in _PyEval_EvalCodeWithName ()
      #38 0x00005555556ec941 in fast_function ()
      #39 0x00005555556f2755 in call_function ()
      #40 0x0000555555714cba in _PyEval_EvalFrameDefault ()
      #41 0x00005555556ec70b in fast_function ()
      #42 0x00005555556f2755 in call_function ()
      #43 0x0000555555714cba in _PyEval_EvalFrameDefault ()
      #44 0x00005555556ec70b in fast_function ()
      ---Type <return> to continue, or q <return> to quit---
      #45 0x00005555556f2755 in call_function ()
      #46 0x0000555555714cba in _PyEval_EvalFrameDefault ()
      #47 0x00005555556ed459 in PyEval_EvalCodeEx ()
      #48 0x00005555556ee1ec in PyEval_EvalCode ()
      #49 0x00005555557125bd in builtin_exec ()
      #50 0x0000555555665a61 in PyCFunction_Call ()
      #51 0x0000555555719fdb in _PyEval_EvalFrameDefault ()
      #52 0x00005555556eba94 in _PyEval_EvalCodeWithName ()
      #53 0x00005555556ec941 in fast_function ()
      #54 0x00005555556f2755 in call_function ()
      #55 0x0000555555714cba in _PyEval_EvalFrameDefault ()
      #56 0x00005555556ec70b in fast_function ()
      #57 0x00005555556f2755 in call_function ()
      #58 0x0000555555714cba in _PyEval_EvalFrameDefault ()
      #59 0x00005555556ec70b in fast_function ()
      #60 0x00005555556f2755 in call_function ()
      #61 0x0000555555714cba in _PyEval_EvalFrameDefault ()
      #62 0x00005555556ec70b in fast_function ()
      #63 0x00005555556f2755 in call_function ()
      #64 0x0000555555714cba in _PyEval_EvalFrameDefault ()
      ---Type <return> to continue, or q <return> to quit---
      #65 0x00005555556ecd7b in _PyFunction_FastCallDict ()
      #66 0x0000555555662f5f in _PyObject_FastCallDict ()
      #67 0x00005555556a7670 in _PyObject_CallMethodIdObjArgs ()
      #68 0x0000555555659a70 in PyImport_ImportModuleLevelObject ()
      #69 0x0000555555717033 in _PyEval_EvalFrameDefault ()
      #70 0x00005555556ed459 in PyEval_EvalCodeEx ()
      #71 0x00005555556ee1ec in PyEval_EvalCode ()
      #72 0x00005555557125bd in builtin_exec ()
      #73 0x0000555555665a61 in PyCFunction_Call ()
      #74 0x0000555555719fdb in _PyEval_EvalFrameDefault ()
      #75 0x00005555556eba94 in _PyEval_EvalCodeWithName ()
      #76 0x00005555556ec941 in fast_function ()
      #77 0x00005555556f2755 in call_function ()
      #78 0x0000555555714cba in _PyEval_EvalFrameDefault ()
      #79 0x00005555556ec70b in fast_function ()
      #80 0x00005555556f2755 in call_function ()
      #81 0x0000555555714cba in _PyEval_EvalFrameDefault ()
      #82 0x00005555556ec70b in fast_function ()
      #83 0x00005555556f2755 in call_function ()
      #84 0x0000555555714cba in _PyEval_EvalFrameDefault ()
      ---Type <return> to continue, or q <return> to quit---
      #85 0x00005555556ec70b in fast_function ()
      #86 0x00005555556f2755 in call_function ()
      #87 0x0000555555714cba in _PyEval_EvalFrameDefault ()
      #88 0x00005555556ecd7b in _PyFunction_FastCallDict ()
      #89 0x0000555555662f5f in _PyObject_FastCallDict ()
      #90 0x00005555556a7670 in _PyObject_CallMethodIdObjArgs ()
      #91 0x0000555555659a70 in PyImport_ImportModuleLevelObject ()
      #92 0x00005555556fd1da in builtin___import__ ()
      #93 0x00005555556659f6 in PyCFunction_Call ()
      #94 0x0000555555719fdb in _PyEval_EvalFrameDefault ()
      #95 0x00005555556eba94 in _PyEval_EvalCodeWithName ()
      #96 0x00005555556ec941 in fast_function ()
      #97 0x00005555556f2755 in call_function ()
      #98 0x0000555555714cba in _PyEval_EvalFrameDefault ()
      #99 0x00005555556ebf21 in _PyEval_EvalCodeWithName ()
      #100 0x00005555556ece1b in _PyFunction_FastCallDict ()
      #101 0x0000555555662f5f in _PyObject_FastCallDict ()
      #102 0x00005555556a7670 in _PyObject_CallMethodIdObjArgs ()
      #103 0x0000555555659933 in PyImport_ImportModuleLevelObject ()
      #104 0x0000555555717033 in _PyEval_EvalFrameDefault ()
      ---Type <return> to continue, or q <return> to quit---
      #105 0x00005555556ed459 in PyEval_EvalCodeEx ()
      #106 0x00005555556ee1ec in PyEval_EvalCode ()
      #107 0x00005555557125bd in builtin_exec ()
      #108 0x0000555555665a61 in PyCFunction_Call ()
      #109 0x0000555555719fdb in _PyEval_EvalFrameDefault ()
      #110 0x00005555556eba94 in _PyEval_EvalCodeWithName ()
      #111 0x00005555556ec941 in fast_function ()
      #112 0x00005555556f2755 in call_function ()
      #113 0x0000555555714cba in _PyEval_EvalFrameDefault ()
      #114 0x00005555556ec70b in fast_function ()
      #115 0x00005555556f2755 in call_function ()
      #116 0x0000555555714cba in _PyEval_EvalFrameDefault ()
      #117 0x00005555556ec70b in fast_function ()
      #118 0x00005555556f2755 in call_function ()
      #119 0x0000555555714cba in _PyEval_EvalFrameDefault ()
      #120 0x00005555556ec70b in fast_function ()
      #121 0x00005555556f2755 in call_function ()
      #122 0x0000555555714cba in _PyEval_EvalFrameDefault ()
      #123 0x00005555556ecd7b in _PyFunction_FastCallDict ()
      #124 0x0000555555662f5f in _PyObject_FastCallDict ()
      ---Type <return> to continue, or q <return> to quit---
      #125 0x00005555556a7670 in _PyObject_CallMethodIdObjArgs ()
      #126 0x0000555555659a70 in PyImport_ImportModuleLevelObject ()
      #127 0x0000555555717033 in _PyEval_EvalFrameDefault ()
      #128 0x00005555556ed459 in PyEval_EvalCodeEx ()
      #129 0x00005555556ee1ec in PyEval_EvalCode ()
      #130 0x00005555557125bd in builtin_exec ()
      #131 0x0000555555665a61 in PyCFunction_Call ()
      #132 0x0000555555719fdb in _PyEval_EvalFrameDefault ()
      #133 0x00005555556eba94 in _PyEval_EvalCodeWithName ()
      #134 0x00005555556ec941 in fast_function ()
      #135 0x00005555556f2755 in call_function ()
      #136 0x0000555555714cba in _PyEval_EvalFrameDefault ()
      #137 0x00005555556ec70b in fast_function ()
      #138 0x00005555556f2755 in call_function ()
      #139 0x0000555555714cba in _PyEval_EvalFrameDefault ()
      #140 0x00005555556ec70b in fast_function ()
      #141 0x00005555556f2755 in call_function ()
      #142 0x0000555555714cba in _PyEval_EvalFrameDefault ()
      #143 0x00005555556ec70b in fast_function ()
      #144 0x00005555556f2755 in call_function ()
      ---Type <return> to continue, or q <return> to quit---
      #145 0x0000555555714cba in _PyEval_EvalFrameDefault ()
      #146 0x00005555556ecd7b in _PyFunction_FastCallDict ()
      #147 0x0000555555662f5f in _PyObject_FastCallDict ()
      #148 0x00005555556a7670 in _PyObject_CallMethodIdObjArgs ()
      #149 0x0000555555659a70 in PyImport_ImportModuleLevelObject ()
      #150 0x0000555555717033 in _PyEval_EvalFrameDefault ()
      #151 0x00005555556ed459 in PyEval_EvalCodeEx ()
      #152 0x00005555556ee1ec in PyEval_EvalCode ()
      #153 0x00005555557689a4 in run_mod ()
      #154 0x000055555562f60c in PyRun_InteractiveOneObjectEx ()
      #155 0x000055555562f7c2 in PyRun_InteractiveLoopFlags ()
      #156 0x000055555562f862 in PyRun_AnyFileExFlags.cold.2773 ()
      #157 0x0000555555631a57 in Py_Main.cold.2798 ()
      #158 0x00005555556344be in main ()
      (gdb) 
      

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            • Assignee:
              pcmoritz Philipp Moritz
              Reporter:
              robertnishihara Robert Nishihara
            • Votes:
              1 Vote for this issue
              Watchers:
              3 Start watching this issue

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              • Created:
                Updated:
                Resolved:

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