Details
-
Bug
-
Status: In Progress
-
Critical
-
Resolution: Unresolved
-
10.0.1
-
Python 3.10.8 on Fedora Linux 36. AMD Ryzen 9 5900 X with 64 GB RAM
Description
Reading nested Parquet data and then converting it to a Pandas DataFrame shows quadratic memory usage and will eventually run out of memory for reasonably small files. I had initially thought this was a regression since 7.0.0, but it looks like 7.0.0 has similar quadratic memory usage that kicks in at higher row counts.
Example code to generate nested Parquet data:
import numpy as np import random import string import pandas as pd _characters = string.ascii_uppercase + string.digits + string.punctuation def make_random_string(N=10): return ''.join(random.choice(_characters) for _ in range(N)) nrows = 1_024_000 filename = 'nested.parquet' arr_len = 10 nested_col = [] for i in range(nrows): nested_col.append(np.array( [{ 'a': None if i % 1000 == 0 else np.random.choice(10000, size=3).astype(np.int64), 'b': None if i % 100 == 0 else random.choice(range(100)), 'c': None if i % 10 == 0 else make_random_string(5) } for i in range(arr_len)] )) df = pd.DataFrame({'c1': nested_col}) df.to_parquet(filename)
And then read into a DataFrame with:
import pyarrow.parquet as pq table = pq.read_table(filename) df = table.to_pandas()
Only reading to an Arrow table isn't a problem, it's the to_pandas method that exhibits the large memory usage. I haven't tested generating nested Arrow data in memory without writing Parquet from Pandas but I assume the problem probably isn't Parquet specific.
Memory usage I see when reading different sized files on a machine with 64 GB RAM:
| Num rows | Memory used with 10.0.1 (MB) | Memory used with 7.0.0 (MB) |
|---|---|---|
| 32,000 | 362 | 361 |
| 64,000 | 531 | 531 |
| 128,000 | 1,152 | 1,101 |
| 256,000 | 2,888 | 1,402 |
| 512,000 | 10,301 | 3,508 |
| 1,024,000 | 38,697 | 5,313 |
| 2,048,000 | OOM | 20,061 |
| 4,096,000 | OOM |
With Arrow 10.0.1, memory usage approximately quadruples when row count doubles above 256k rows. With Arrow 7.0.0 memory usage is more linear but then quadruples from 1024k to 2048k rows.
PyArrow 8.0.0 shows similar memory usage to 10.0.1 so it looks like something changed between 7.0.0 and 8.0.0.
Attachments
Attachments
Issue Links
- links to
