Details
-
Bug
-
Status: Open
-
Major
-
Resolution: Unresolved
-
None
-
None
-
None
-
None
Description
Hi,
I try to install arrow on a RStudio Server. I tried different approaches but always ran into the same poblem. Do you have any idea what goes wrong? Thanks.
// > Sys.setenv(ARROW_R_DEV=TRUE) > install.packages("arrow") Installiere Paket nach ‘/home/*/R/x86_64-pc-linux-gnu-library/4.2’ (da ‘lib’ nicht spezifiziert) versuche URL 'https://cloud.r-project.org/src/contrib/arrow_9.0.0.tar.gz' Content type 'application/x-gzip' length 4900968 bytes (4.7 MB) ================================================== downloaded 4.7 MB * installing *source* package ‘arrow’ ... ** Paket ‘arrow’ erfolgreich entpackt und MD5 Summen überprüft ** using staged installation *** Found local C++ source: 'tools/cpp' *** Building libarrow from source For build options and troubleshooting, see the install vignette: https://cran.r-project.org/web/packages/arrow/vignettes/install.html *** Building with MAKEFLAGS= -j2 **** cmake: /usr/bin/cmake **** arrow with SOURCE_DIR='tools/cpp' BUILD_DIR='/tmp/Rtmp64sUMd/file553b4faa5f21' DEST_DIR='libarrow/arrow-9.0.0' CMAKE='/usr/bin/cmake' EXTRA_CMAKE_FLAGS='' CC='gcc' CXX='g++ -std=gnu++11' LDFLAGS='-Wl,-z,relro' ARROW_S3='OFF' ARROW_GCS='OFF' ARROW_MIMALLOC='OFF' ++ pwd + : /tmp/Rtmp1PYvFm/R.INSTALL55147fc8d301/arrow + : tools/cpp + : /tmp/Rtmp64sUMd/file553b4faa5f21 + : libarrow/arrow-9.0.0 + : /usr/bin/cmake ++ cd tools/cpp ++ pwd + SOURCE_DIR=/tmp/Rtmp1PYvFm/R.INSTALL55147fc8d301/arrow/tools/cpp ++ mkdir -p libarrow/arrow-9.0.0 ++ cd libarrow/arrow-9.0.0 ++ pwd + DEST_DIR=/tmp/Rtmp1PYvFm/R.INSTALL55147fc8d301/arrow/libarrow/arrow-9.0.0 + '[' '' '!=' '' ']' + '[' '' = false ']' + ARROW_DEFAULT_PARAM=OFF + mkdir -p /tmp/Rtmp64sUMd/file553b4faa5f21 + pushd /tmp/Rtmp64sUMd/file553b4faa5f21 /tmp/Rtmp64sUMd/file553b4faa5f21 /tmp/Rtmp1PYvFm/R.INSTALL55147fc8d301/arrow + /usr/bin/cmake -DARROW_BOOST_USE_SHARED=OFF -DARROW_BUILD_TESTS=OFF -DARROW_BUILD_SHARED=OFF -DARROW_BUILD_STATIC=ON -DARROW_COMPUTE=ON -DARROW_CSV=ON -DARROW_DATASET=ON -DARROW_DEPENDENCY_SOURCE=AUTO -DAWSSDK_SOURCE= -DARROW_FILESYSTEM=ON -DARROW_GCS=OFF -DARROW_JEMALLOC=OFF -DARROW_MIMALLOC=OFF -DARROW_JSON=ON -DARROW_PARQUET=ON -DARROW_S3=OFF -DARROW_WITH_BROTLI=OFF -DARROW_WITH_BZ2=OFF -DARROW_WITH_LZ4=ON -DARROW_WITH_RE2=ON -DARROW_WITH_SNAPPY=ON -DARROW_WITH_UTF8PROC=ON -DARROW_WITH_ZLIB=OFF -DARROW_WITH_ZSTD=OFF -DARROW_VERBOSE_THIRDPARTY_BUILD=OFF -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_LIBDIR=lib -DCMAKE_INSTALL_PREFIX=/tmp/Rtmp1PYvFm/R.INSTALL55147fc8d301/arrow/libarrow/arrow-9.0.0 -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_UNITY_BUILD=OFF -Dxsimd_SOURCE= -G 'Unix Makefiles' /tmp/Rtmp1PYvFm/R.INSTALL55147fc8d301/arrow/tools/cpp -- Building using CMake version: 3.13.4 -- The C compiler identification is GNU 8.3.0 -- The CXX compiler identification is GNU 8.3.0 -- Check for working C compiler: /usr/bin/gcc -- Check for working C compiler: /usr/bin/gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/g++ -- Check for working CXX compiler: /usr/bin/g++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Arrow version: 9.0.0 (full: '9.0.0') -- Arrow SO version: 900 (full: 900.0.0) -- clang-tidy 12 not found -- clang-format 12 not found -- Could NOT find ClangTools (missing: CLANG_FORMAT_BIN CLANG_TIDY_BIN) -- infer not found fatal: Kein Git-Repository (oder irgendeines der Elternverzeichnisse): .git -- Found Python3: /usr/bin/python3.7 (found version "3.7.3") found components: Interpreter -- Found cpplint executable at /tmp/Rtmp1PYvFm/R.INSTALL55147fc8d301/arrow/tools/cpp/build-support/cpplint.py -- System processor: x86_64 -- Performing Test CXX_SUPPORTS_SSE4_2 -- Performing Test CXX_SUPPORTS_SSE4_2 - Success -- Performing Test CXX_SUPPORTS_AVX2 -- Performing Test CXX_SUPPORTS_AVX2 - Success -- Performing Test CXX_SUPPORTS_AVX512 -- Performing Test CXX_SUPPORTS_AVX512 - Success -- Arrow build warning level: PRODUCTION -- Using ld linker -- Configured for RELEASE build (set with cmake -DCMAKE_BUILD_TYPE={release,debug,...}) -- Build Type: RELEASE -- Using AUTO approach to find dependencies -- ARROW_ABSL_BUILD_VERSION: 20211102.0 -- ARROW_ABSL_BUILD_SHA256_CHECKSUM: dcf71b9cba8dc0ca9940c4b316a0c796be8fab42b070bb6b7cab62b48f0e66c4 -- ARROW_AWSSDK_BUILD_VERSION: 1.8.133 -- ARROW_AWSSDK_BUILD_SHA256_CHECKSUM: d6c495bc06be5e21dac716571305d77437e7cfd62a2226b8fe48d9ab5785a8d6 -- ARROW_AWS_CHECKSUMS_BUILD_VERSION: v0.1.12 -- ARROW_AWS_CHECKSUMS_BUILD_SHA256_CHECKSUM: 394723034b81cc7cd528401775bc7aca2b12c7471c92350c80a0e2fb9d2909fe -- ARROW_AWS_C_COMMON_BUILD_VERSION: v0.6.9 -- ARROW_AWS_C_COMMON_BUILD_SHA256_CHECKSUM: 928a3e36f24d1ee46f9eec360ec5cebfe8b9b8994fe39d4fa74ff51aebb12717 -- ARROW_AWS_C_EVENT_STREAM_BUILD_VERSION: v0.1.5 -- ARROW_AWS_C_EVENT_STREAM_BUILD_SHA256_CHECKSUM: f1b423a487b5d6dca118bfc0d0c6cc596dc476b282258a3228e73a8f730422d4 -- ARROW_BOOST_BUILD_VERSION: 1.75.0 -- ARROW_BOOST_BUILD_SHA256_CHECKSUM: 267e04a7c0bfe85daf796dedc789c3a27a76707e1c968f0a2a87bb96331e2b61 -- ARROW_BROTLI_BUILD_VERSION: v1.0.9 -- ARROW_BROTLI_BUILD_SHA256_CHECKSUM: f9e8d81d0405ba66d181529af42a3354f838c939095ff99930da6aa9cdf6fe46 -- ARROW_BZIP2_BUILD_VERSION: 1.0.8 -- ARROW_BZIP2_BUILD_SHA256_CHECKSUM: ab5a03176ee106d3f0fa90e381da478ddae405918153cca248e682cd0c4a2269 -- ARROW_CARES_BUILD_VERSION: 1.17.2 -- ARROW_CARES_BUILD_SHA256_CHECKSUM: 4803c844ce20ce510ef0eb83f8ea41fa24ecaae9d280c468c582d2bb25b3913d -- ARROW_CRC32C_BUILD_VERSION: 1.1.2 -- ARROW_CRC32C_BUILD_SHA256_CHECKSUM: ac07840513072b7fcebda6e821068aa04889018f24e10e46181068fb214d7e56 -- ARROW_GBENCHMARK_BUILD_VERSION: v1.6.0 -- ARROW_GBENCHMARK_BUILD_SHA256_CHECKSUM: 1f71c72ce08d2c1310011ea6436b31e39ccab8c2db94186d26657d41747c85d6 -- ARROW_GFLAGS_BUILD_VERSION: v2.2.2 -- ARROW_GFLAGS_BUILD_SHA256_CHECKSUM: 34af2f15cf7367513b352bdcd2493ab14ce43692d2dcd9dfc499492966c64dcf -- ARROW_GLOG_BUILD_VERSION: v0.5.0 -- ARROW_GLOG_BUILD_SHA256_CHECKSUM: eede71f28371bf39aa69b45de23b329d37214016e2055269b3b5e7cfd40b59f5 -- ARROW_GOOGLE_CLOUD_CPP_BUILD_VERSION: v1.42.0 -- ARROW_GOOGLE_CLOUD_CPP_BUILD_SHA256_CHECKSUM: c06ae9aededbb8aa217a6d2453754daa40b815f9a4004bc4f2d2d215c79828aa -- ARROW_GRPC_BUILD_VERSION: v1.46.3 -- ARROW_GRPC_BUILD_SHA256_CHECKSUM: d6cbf22cb5007af71b61c6be316a79397469c58c82a942552a62e708bce60964 -- ARROW_GTEST_BUILD_VERSION: 1.11.0 -- ARROW_GTEST_BUILD_SHA256_CHECKSUM: b4870bf121ff7795ba20d20bcdd8627b8e088f2d1dab299a031c1034eddc93d5 -- ARROW_JEMALLOC_BUILD_VERSION: 5.3.0 -- ARROW_JEMALLOC_BUILD_SHA256_CHECKSUM: 2db82d1e7119df3e71b7640219b6dfe84789bc0537983c3b7ac4f7189aecfeaa -- ARROW_LZ4_BUILD_VERSION: 8f61d8eb7c6979769a484cde8df61ff7c4c77765 -- ARROW_LZ4_BUILD_SHA256_CHECKSUM: 5b072d848f2f93fddb97e1143e22c1bd7fa19fc8431ee69e21758190a88125b4 -- ARROW_MIMALLOC_BUILD_VERSION: v2.0.6 -- ARROW_MIMALLOC_BUILD_SHA256_CHECKSUM: 9f05c94cc2b017ed13698834ac2a3567b6339a8bde27640df5a1581d49d05ce5 -- ARROW_NLOHMANN_JSON_BUILD_VERSION: v3.10.5 -- ARROW_NLOHMANN_JSON_BUILD_SHA256_CHECKSUM: 5daca6ca216495edf89d167f808d1d03c4a4d929cef7da5e10f135ae1540c7e4 -- ARROW_OPENTELEMETRY_BUILD_VERSION: v1.4.1 -- ARROW_OPENTELEMETRY_BUILD_SHA256_CHECKSUM: 301b1ab74a664723560f46c29f228360aff1e2d63e930b963755ea077ae67524 -- ARROW_OPENTELEMETRY_PROTO_BUILD_VERSION: v0.17.0 -- ARROW_OPENTELEMETRY_PROTO_BUILD_SHA256_CHECKSUM: f269fbcb30e17b03caa1decd231ce826e59d7651c0f71c3b28eb5140b4bb5412 -- ARROW_ORC_BUILD_VERSION: 1.7.5 -- ARROW_ORC_BUILD_SHA256_CHECKSUM: b90cae5853e3ea0e5bf64e3883d09d871ec280536e0bb2cc52d08f79f0be0010 -- ARROW_PROTOBUF_BUILD_VERSION: v21.3 -- ARROW_PROTOBUF_BUILD_SHA256_CHECKSUM: 2f723218f6cb709ae4cdc4fb5ed56a5951fc5d466f0128ce4c946b8c78c8c49f -- ARROW_RAPIDJSON_BUILD_VERSION: 232389d4f1012dddec4ef84861face2d2ba85709 -- ARROW_RAPIDJSON_BUILD_SHA256_CHECKSUM: b9290a9a6d444c8e049bd589ab804e0ccf2b05dc5984a19ed5ae75d090064806 -- ARROW_RE2_BUILD_VERSION: 2022-06-01 -- ARROW_RE2_BUILD_SHA256_CHECKSUM: f89c61410a072e5cbcf8c27e3a778da7d6fd2f2b5b1445cd4f4508bee946ab0f -- ARROW_SNAPPY_BUILD_VERSION: 1.1.9 -- ARROW_SNAPPY_BUILD_SHA256_CHECKSUM: 75c1fbb3d618dd3a0483bff0e26d0a92b495bbe5059c8b4f1c962b478b6e06e7 -- ARROW_SNAPPY_OLD_BUILD_VERSION: 1.1.8 -- ARROW_SNAPPY_OLD_BUILD_SHA256_CHECKSUM: 16b677f07832a612b0836178db7f374e414f94657c138e6993cbfc5dcc58651f -- ARROW_SUBSTRAIT_BUILD_VERSION: v0.6.0 -- ARROW_SUBSTRAIT_BUILD_SHA256_CHECKSUM: 7b8583b9684477e9027f417bbfb4febb8acfeb01923dcaa7cf0fd3f921d69c88 -- ARROW_THRIFT_BUILD_VERSION: 0.16.0 -- ARROW_THRIFT_BUILD_SHA256_CHECKSUM: f460b5c1ca30d8918ff95ea3eb6291b3951cf518553566088f3f2be8981f6209 -- ARROW_UCX_BUILD_VERSION: 1.12.1 -- ARROW_UCX_BUILD_SHA256_CHECKSUM: 9bef31aed0e28bf1973d28d74d9ac4f8926c43ca3b7010bd22a084e164e31b71 -- ARROW_UTF8PROC_BUILD_VERSION: v2.7.0 -- ARROW_UTF8PROC_BUILD_SHA256_CHECKSUM: 4bb121e297293c0fd55f08f83afab6d35d48f0af4ecc07523ad8ec99aa2b12a1 -- ARROW_XSIMD_BUILD_VERSION: 8.1.0 -- ARROW_XSIMD_BUILD_SHA256_CHECKSUM: d52551360d37709675237d2a0418e28f70995b5b7cdad7c674626bcfbbf48328 -- ARROW_ZLIB_BUILD_VERSION: 1.2.12 -- ARROW_ZLIB_BUILD_SHA256_CHECKSUM: 91844808532e5ce316b3c010929493c0244f3d37593afd6de04f71821d5136d9 -- ARROW_ZSTD_BUILD_VERSION: v1.5.2 -- ARROW_ZSTD_BUILD_SHA256_CHECKSUM: f7de13462f7a82c29ab865820149e778cbfe01087b3a55b5332707abf9db4a6e -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Check if compiler accepts -pthread -- Check if compiler accepts -pthread - yes -- Found Threads: TRUE -- Looking for _M_ARM64 -- Looking for _M_ARM64 - not found -- Looking for __SIZEOF_INT128__ -- Looking for __SIZEOF_INT128__ - found -- Could NOT find Boost -- Boost include dir: /tmp/Rtmp64sUMd/file553b4faa5f21/boost_ep-prefix/src/boost_ep CMake Warning at cmake_modules/FindSnappyAlt.cmake:25 (find_package): By not providing "FindSnappy.cmake" in CMAKE_MODULE_PATH this project has asked CMake to find a package configuration file provided by "Snappy", but CMake did not find one. Could not find a package configuration file provided by "Snappy" with any of the following names: SnappyConfig.cmake snappy-config.cmake Add the installation prefix of "Snappy" to CMAKE_PREFIX_PATH or set "Snappy_DIR" to a directory containing one of the above files. If "Snappy" provides a separate development package or SDK, be sure it has been installed. Call Stack (most recent call first): cmake_modules/ThirdpartyToolchain.cmake:257 (find_package) cmake_modules/ThirdpartyToolchain.cmake:1137 (resolve_dependency) CMakeLists.txt:575 (include) -- Could NOT find SnappyAlt (missing: Snappy_LIB Snappy_INCLUDE_DIR) -- Building snappy from source -- Building without OpenSSL support. Minimum OpenSSL version 1.0.2 required. -- Checking for module 'thrift' -- No package 'thrift' found -- Could NOT find Thrift: Found unsuitable version "", but required is at least "0.11.0" (found THRIFT_LIB-NOTFOUND) -- Building Apache Thrift from source CMake Warning at cmake_modules/FindRapidJSONAlt.cmake:25 (find_package): By not providing "FindRapidJSON.cmake" in CMAKE_MODULE_PATH this project has asked CMake to find a package configuration file provided by "RapidJSON", but CMake did not find one. Could not find a package configuration file provided by "RapidJSON" (requested version 1.1.0) with any of the following names: RapidJSONConfig.cmake rapidjson-config.cmake Add the installation prefix of "RapidJSON" to CMAKE_PREFIX_PATH or set "RapidJSON_DIR" to a directory containing one of the above files. If "RapidJSON" provides a separate development package or SDK, be sure it has been installed. Call Stack (most recent call first): cmake_modules/ThirdpartyToolchain.cmake:257 (find_package) cmake_modules/ThirdpartyToolchain.cmake:2189 (resolve_dependency) CMakeLists.txt:575 (include) -- Could NOT find RapidJSONAlt (missing: RAPIDJSON_INCLUDE_DIR) (Required is at least version "1.1.0") -- Building RapidJSON from source CMake Warning at cmake_modules/ThirdpartyToolchain.cmake:257 (find_package): By not providing "Findxsimd.cmake" in CMAKE_MODULE_PATH this project has asked CMake to find a package configuration file provided by "xsimd", but CMake did not find one. Could not find a package configuration file provided by "xsimd" (requested version 8.1.0) with any of the following names: xsimdConfig.cmake xsimd-config.cmake Add the installation prefix of "xsimd" to CMAKE_PREFIX_PATH or set "xsimd_DIR" to a directory containing one of the above files. If "xsimd" provides a separate development package or SDK, be sure it has been installed. Call Stack (most recent call first): cmake_modules/ThirdpartyToolchain.cmake:2246 (resolve_dependency) CMakeLists.txt:575 (include) -- Building xsimd from source CMake Warning at cmake_modules/Findlz4Alt.cmake:25 (find_package): By not providing "Findlz4.cmake" in CMAKE_MODULE_PATH this project has asked CMake to find a package configuration file provided by "lz4", but CMake did not find one. Could not find a package configuration file provided by "lz4" with any of the following names: lz4Config.cmake lz4-config.cmake Add the installation prefix of "lz4" to CMAKE_PREFIX_PATH or set "lz4_DIR" to a directory containing one of the above files. If "lz4" provides a separate development package or SDK, be sure it has been installed. Call Stack (most recent call first): cmake_modules/ThirdpartyToolchain.cmake:257 (find_package) cmake_modules/ThirdpartyToolchain.cmake:2354 (resolve_dependency) CMakeLists.txt:575 (include) -- Checking for module 'liblz4' -- No package 'liblz4' found -- Could NOT find lz4Alt (missing: LZ4_LIB LZ4_INCLUDE_DIR) -- Building lz4 from source CMake Warning at cmake_modules/Findre2Alt.cmake:25 (find_package): By not providing "Findre2.cmake" in CMAKE_MODULE_PATH this project has asked CMake to find a package configuration file provided by "re2", but CMake did not find one. Could not find a package configuration file provided by "re2" with any of the following names: re2Config.cmake re2-config.cmake Add the installation prefix of "re2" to CMAKE_PREFIX_PATH or set "re2_DIR" to a directory containing one of the above files. If "re2" provides a separate development package or SDK, be sure it has been installed. Call Stack (most recent call first): cmake_modules/ThirdpartyToolchain.cmake:257 (find_package) cmake_modules/ThirdpartyToolchain.cmake:2483 (resolve_dependency) CMakeLists.txt:575 (include) -- Checking for module 're2' -- No package 're2' found -- Could NOT find re2Alt (missing: RE2_LIB RE2_INCLUDE_DIR) -- Building RE2 from source -- Could NOT find utf8proc: Found unsuitable version "", but required is at least "2.2.0" (found utf8proc_LIB-NOTFOUND) -- Building utf8proc from source -- Found hdfs.h at: /tmp/Rtmp1PYvFm/R.INSTALL55147fc8d301/arrow/tools/cpp/thirdparty/hadoop/include/hdfs.h -- All bundled static libraries: Snappy::snappy-static;thrift::thrift;lz4::lz4;re2::re2;utf8proc::utf8proc -- CMAKE_C_FLAGS: -O3 -DNDEBUG -Wall -fno-semantic-interposition -msse4.2 -- CMAKE_CXX_FLAGS: -Wno-noexcept-type -fdiagnostics-color=always -O3 -DNDEBUG -Wall -fno-semantic-interposition -msse4.2 -- Looking for backtrace -- Looking for backtrace - found -- backtrace facility detected in default set of libraries -- Found Backtrace: /usr/include -- Creating bundled static library target arrow_bundled_dependencies at /tmp/Rtmp64sUMd/file553b4faa5f21/release/libarrow_bundled_dependencies.a -- --------------------------------------------------------------------- -- Arrow version: 9.0.0 -- -- Build configuration summary: -- Generator: Unix Makefiles -- Build type: RELEASE -- Source directory: /tmp/Rtmp1PYvFm/R.INSTALL55147fc8d301/arrow/tools/cpp -- Install prefix: /tmp/Rtmp1PYvFm/R.INSTALL55147fc8d301/arrow/libarrow/arrow-9.0.0 -- -- Compile and link options: -- -- ARROW_CXXFLAGS="" [default=""] -- Compiler flags to append when compiling Arrow -- ARROW_BUILD_STATIC=ON [default=ON] -- Build static libraries -- ARROW_BUILD_SHARED=OFF [default=ON] -- Build shared libraries -- ARROW_PACKAGE_KIND="" [default=""] -- Arbitrary string that identifies the kind of package -- (for informational purposes) -- ARROW_GIT_ID="" [default=""] -- The Arrow git commit id (if any) -- ARROW_GIT_DESCRIPTION="" [default=""] -- The Arrow git commit description (if any) -- ARROW_NO_DEPRECATED_API=OFF [default=OFF] -- Exclude deprecated APIs from build -- ARROW_POSITION_INDEPENDENT_CODE=ON [default=ON] -- Whether to create position-independent target -- ARROW_USE_CCACHE=ON [default=ON] -- Use ccache when compiling (if available) -- ARROW_USE_LD_GOLD=OFF [default=OFF] -- Use ld.gold for linking on Linux (if available) -- ARROW_USE_PRECOMPILED_HEADERS=OFF [default=OFF] -- Use precompiled headers when compiling -- ARROW_SIMD_LEVEL=SSE4_2 [default=NONE|SSE4_2|AVX2|AVX512|NEON|DEFAULT] -- Compile-time SIMD optimization level -- ARROW_RUNTIME_SIMD_LEVEL=MAX [default=NONE|SSE4_2|AVX2|AVX512|MAX] -- Max runtime SIMD optimization level -- ARROW_ARMV8_ARCH=armv8-a [default=armv8-a|armv8-a+crc+crypto] -- Arm64 arch and extensions -- ARROW_ALTIVEC=ON [default=ON] -- Build with Altivec if compiler has support -- ARROW_RPATH_ORIGIN=OFF [default=OFF] -- Build Arrow libraries with RATH set to $ORIGIN -- ARROW_INSTALL_NAME_RPATH=ON [default=ON] -- Build Arrow libraries with install_name set to @rpath -- ARROW_GGDB_DEBUG=ON [default=ON] -- Pass -ggdb flag to debug builds -- -- Test and benchmark options: -- -- ARROW_BUILD_EXAMPLES=OFF [default=OFF] -- Build the Arrow examples -- ARROW_BUILD_TESTS=OFF [default=OFF] -- Build the Arrow googletest unit tests -- ARROW_ENABLE_TIMING_TESTS=ON [default=ON] -- Enable timing-sensitive tests -- ARROW_BUILD_INTEGRATION=OFF [default=OFF] -- Build the Arrow integration test executables -- ARROW_BUILD_BENCHMARKS=OFF [default=OFF] -- Build the Arrow micro benchmarks -- ARROW_BUILD_BENCHMARKS_REFERENCE=OFF [default=OFF] -- Build the Arrow micro reference benchmarks -- ARROW_BUILD_OPENMP_BENCHMARKS=OFF [default=OFF] -- Build the Arrow benchmarks that rely on OpenMP -- ARROW_BUILD_DETAILED_BENCHMARKS=OFF [default=OFF] -- Build benchmarks that do a longer exploration of performance -- ARROW_TEST_LINKAGE=static [default=shared|static] -- Linkage of Arrow libraries with unit tests executables. -- ARROW_FUZZING=OFF [default=OFF] -- Build Arrow Fuzzing executables -- ARROW_LARGE_MEMORY_TESTS=OFF [default=OFF] -- Enable unit tests which use large memory -- -- Lint options: -- -- ARROW_ONLY_LINT=OFF [default=OFF] -- Only define the lint and check-format targets -- ARROW_VERBOSE_LINT=OFF [default=OFF] -- If off, 'quiet' flags will be passed to linting tools -- ARROW_GENERATE_COVERAGE=OFF [default=OFF] -- Build with C++ code coverage enabled -- -- Checks options: -- -- ARROW_TEST_MEMCHECK=OFF [default=OFF] -- Run the test suite using valgrind --tool=memcheck -- ARROW_USE_ASAN=OFF [default=OFF] -- Enable Address Sanitizer checks -- ARROW_USE_TSAN=OFF [default=OFF] -- Enable Thread Sanitizer checks -- ARROW_USE_UBSAN=OFF [default=OFF] -- Enable Undefined Behavior sanitizer checks -- -- Project component options: -- -- ARROW_BUILD_UTILITIES=OFF [default=OFF] -- Build Arrow commandline utilities -- ARROW_COMPUTE=ON [default=OFF] -- Build the Arrow Compute Modules -- ARROW_CSV=ON [default=OFF] -- Build the Arrow CSV Parser Module -- ARROW_CUDA=OFF [default=OFF] -- Build the Arrow CUDA extensions (requires CUDA toolkit) -- ARROW_DATASET=ON [default=OFF] -- Build the Arrow Dataset Modules -- ARROW_SUBSTRAIT=OFF [default=OFF] -- Build the Arrow Substrait Consumer Module -- ARROW_FILESYSTEM=ON [default=OFF] -- Build the Arrow Filesystem Layer -- ARROW_FLIGHT=OFF [default=OFF] -- Build the Arrow Flight RPC System (requires GRPC, Protocol Buffers) -- ARROW_FLIGHT_SQL=OFF [default=OFF] -- Build the Arrow Flight SQL extension -- ARROW_GANDIVA=OFF [default=OFF] -- Build the Gandiva libraries -- ARROW_GCS=OFF [default=OFF] -- Build Arrow with GCS support (requires the GCloud SDK for C++) -- ARROW_HDFS=OFF [default=OFF] -- Build the Arrow HDFS bridge -- ARROW_IPC=ON [default=ON] -- Build the Arrow IPC extensions -- ARROW_JEMALLOC=OFF [default=ON] -- Build the Arrow jemalloc-based allocator -- ARROW_JNI=OFF [default=OFF] -- Build the Arrow JNI lib -- ARROW_JSON=ON [default=OFF] -- Build Arrow with JSON support (requires RapidJSON) -- ARROW_MIMALLOC=OFF [default=OFF] -- Build the Arrow mimalloc-based allocator -- ARROW_PARQUET=ON [default=OFF] -- Build the Parquet libraries -- ARROW_ORC=OFF [default=OFF] -- Build the Arrow ORC adapter -- ARROW_PLASMA=OFF [default=OFF] -- Build the plasma object store along with Arrow -- ARROW_PLASMA_JAVA_CLIENT=OFF [default=OFF] -- Build the plasma object store java client -- ARROW_PYTHON=OFF [default=OFF] -- Build the Arrow CPython extensions -- ARROW_S3=OFF [default=OFF] -- Build Arrow with S3 support (requires the AWS SDK for C++) -- ARROW_SKYHOOK=OFF [default=OFF] -- Build the Skyhook libraries -- ARROW_TENSORFLOW=OFF [default=OFF] -- Build Arrow with TensorFlow support enabled -- ARROW_TESTING=OFF [default=OFF] -- Build the Arrow testing libraries -- -- Thirdparty toolchain options: -- -- ARROW_DEPENDENCY_SOURCE=AUTO [default=AUTO|BUNDLED|SYSTEM|CONDA|VCPKG|BREW] -- Method to use for acquiring arrow's build dependencies -- ARROW_VERBOSE_THIRDPARTY_BUILD=OFF [default=OFF] -- Show output from ExternalProjects rather than just logging to files -- ARROW_DEPENDENCY_USE_SHARED=ON [default=ON] -- Link to shared libraries -- ARROW_BOOST_USE_SHARED=OFF [default=ON] -- Rely on Boost shared libraries where relevant -- ARROW_BROTLI_USE_SHARED=ON [default=ON] -- Rely on Brotli shared libraries where relevant -- ARROW_BZ2_USE_SHARED=ON [default=ON] -- Rely on Bz2 shared libraries where relevant -- ARROW_GFLAGS_USE_SHARED=ON [default=ON] -- Rely on GFlags shared libraries where relevant -- ARROW_GRPC_USE_SHARED=ON [default=ON] -- Rely on gRPC shared libraries where relevant -- ARROW_JEMALLOC_USE_SHARED=ON [default=ON] -- Rely on jemalloc shared libraries where relevant -- ARROW_LZ4_USE_SHARED=ON [default=ON] -- Rely on lz4 shared libraries where relevant -- ARROW_OPENSSL_USE_SHARED=ON [default=ON] -- Rely on OpenSSL shared libraries where relevant -- ARROW_PROTOBUF_USE_SHARED=ON [default=ON] -- Rely on Protocol Buffers shared libraries where relevant -- ARROW_SNAPPY_USE_SHARED=ON [default=ON] -- Rely on snappy shared libraries where relevant -- ARROW_THRIFT_USE_SHARED=ON [default=ON] -- Rely on thrift shared libraries where relevant -- ARROW_UTF8PROC_USE_SHARED=ON [default=ON] -- Rely on utf8proc shared libraries where relevant -- ARROW_ZSTD_USE_SHARED=ON [default=ON] -- Rely on zstd shared libraries where relevant -- ARROW_USE_GLOG=OFF [default=OFF] -- Build libraries with glog support for pluggable logging -- ARROW_WITH_BACKTRACE=ON [default=ON] -- Build with backtrace support -- ARROW_WITH_OPENTELEMETRY=OFF [default=OFF] -- Build libraries with OpenTelemetry support for distributed tracing -- ARROW_WITH_BROTLI=OFF [default=OFF] -- Build with Brotli compression -- ARROW_WITH_BZ2=OFF [default=OFF] -- Build with BZ2 compression -- ARROW_WITH_LZ4=ON [default=OFF] -- Build with lz4 compression -- ARROW_WITH_SNAPPY=ON [default=OFF] -- Build with Snappy compression -- ARROW_WITH_ZLIB=OFF [default=OFF] -- Build with zlib compression -- ARROW_WITH_ZSTD=OFF [default=OFF] -- Build with zstd compression -- ARROW_WITH_UCX=OFF [default=OFF] -- Build with UCX transport for Arrow Flight -- (only used if ARROW_FLIGHT is ON) -- ARROW_WITH_UTF8PROC=ON [default=ON] -- Build with support for Unicode properties using the utf8proc library -- (only used if ARROW_COMPUTE is ON or ARROW_GANDIVA is ON) -- ARROW_WITH_RE2=ON [default=ON] -- Build with support for regular expressions using the re2 library -- (only used if ARROW_COMPUTE or ARROW_GANDIVA is ON) -- -- Parquet options: -- -- PARQUET_MINIMAL_DEPENDENCY=OFF [default=OFF] -- Depend only on Thirdparty headers to build libparquet. -- Always OFF if building binaries -- PARQUET_BUILD_EXECUTABLES=OFF [default=OFF] -- Build the Parquet executable CLI tools. Requires static libraries to be built. -- PARQUET_BUILD_EXAMPLES=OFF [default=OFF] -- Build the Parquet examples. Requires static libraries to be built. -- PARQUET_REQUIRE_ENCRYPTION=OFF [default=OFF] -- Build support for encryption. Fail if OpenSSL is not found -- -- Gandiva options: -- -- ARROW_GANDIVA_JAVA=OFF [default=OFF] -- Build the Gandiva JNI wrappers -- ARROW_GANDIVA_STATIC_LIBSTDCPP=OFF [default=OFF] -- Include -static-libstdc++ -static-libgcc when linking with -- Gandiva static libraries -- ARROW_GANDIVA_PC_CXX_FLAGS="" [default=""] -- Compiler flags to append when pre-compiling Gandiva operations -- -- Advanced developer options: -- -- ARROW_EXTRA_ERROR_CONTEXT=OFF [default=OFF] -- Compile with extra error context (line numbers, code) -- ARROW_OPTIONAL_INSTALL=OFF [default=OFF] -- If enabled install ONLY targets that have already been built. Please be -- advised that if this is enabled 'install' will fail silently on components -- that have not been built -- Outputting build configuration summary to /tmp/Rtmp64sUMd/file553b4faa5f21/cmake_summary.json -- Configuring done -- Generating done -- Build files have been written to: /tmp/Rtmp64sUMd/file553b4faa5f21 + /usr/bin/cmake --build . --target install Scanning dependencies of target snappy_ep Scanning dependencies of target utf8proc_ep [ 0%] Creating directories for 'snappy_ep' [ 1%] Creating directories for 'utf8proc_ep' [ 1%] Performing download step (download, verify and extract) for 'snappy_ep' [ 1%] Performing download step (download, verify and extract) for 'utf8proc_ep' -- utf8proc_ep download command succeeded. See also /tmp/Rtmp64sUMd/file553b4faa5f21/utf8proc_ep-prefix/src/utf8proc_ep-stamp/utf8proc_ep-download-*.log [ 2%] No patch step for 'utf8proc_ep' [ 2%] No update step for 'utf8proc_ep' [ 2%] Performing configure step for 'utf8proc_ep' -- snappy_ep download command succeeded. See also /tmp/Rtmp64sUMd/file553b4faa5f21/snappy_ep-prefix/src/snappy_ep-stamp/snappy_ep-download-*.log [ 2%] No patch step for 'snappy_ep' [ 3%] No update step for 'snappy_ep' [ 3%] Performing configure step for 'snappy_ep' -- utf8proc_ep configure command succeeded. See also /tmp/Rtmp64sUMd/file553b4faa5f21/utf8proc_ep-prefix/src/utf8proc_ep-stamp/utf8proc_ep-configure-*.log [ 3%] Performing build step for 'utf8proc_ep' -- utf8proc_ep build command succeeded. See also /tmp/Rtmp64sUMd/file553b4faa5f21/utf8proc_ep-prefix/src/utf8proc_ep-stamp/utf8proc_ep-build-*.log [ 3%] Performing install step for 'utf8proc_ep' -- utf8proc_ep install command succeeded. See also /tmp/Rtmp64sUMd/file553b4faa5f21/utf8proc_ep-prefix/src/utf8proc_ep-stamp/utf8proc_ep-install-*.log [ 3%] Completed 'utf8proc_ep' [ 3%] Built target utf8proc_ep Scanning dependencies of target boost_ep [ 3%] Creating directories for 'boost_ep' [ 3%] Performing download step (download, verify and extract) for 'boost_ep' -- snappy_ep configure command succeeded. See also /tmp/Rtmp64sUMd/file553b4faa5f21/snappy_ep-prefix/src/snappy_ep-stamp/snappy_ep-configure-*.log [ 4%] Performing build step for 'snappy_ep' -- snappy_ep build command succeeded. See also /tmp/Rtmp64sUMd/file553b4faa5f21/snappy_ep-prefix/src/snappy_ep-stamp/snappy_ep-build-*.log [ 4%] Performing install step for 'snappy_ep' -- snappy_ep install command succeeded. See also /tmp/Rtmp64sUMd/file553b4faa5f21/snappy_ep-prefix/src/snappy_ep-stamp/snappy_ep-install-*.log [ 5%] Completed 'snappy_ep' [ 5%] Built target snappy_ep Scanning dependencies of target rapidjson_ep [ 6%] Creating directories for 'rapidjson_ep' [ 6%] Performing download step (download, verify and extract) for 'rapidjson_ep' -- rapidjson_ep download command succeeded. See also /tmp/Rtmp64sUMd/file553b4faa5f21/src/rapidjson_ep-stamp/rapidjson_ep-download-*.log [ 6%] No patch step for 'rapidjson_ep' [ 6%] No update step for 'rapidjson_ep' [ 7%] Performing configure step for 'rapidjson_ep' -- rapidjson_ep configure command succeeded. See also /tmp/Rtmp64sUMd/file553b4faa5f21/src/rapidjson_ep-stamp/rapidjson_ep-configure-*.log [ 7%] Performing build step for 'rapidjson_ep' -- rapidjson_ep build command succeeded. See also /tmp/Rtmp64sUMd/file553b4faa5f21/src/rapidjson_ep-stamp/rapidjson_ep-build-*.log [ 7%] Performing install step for 'rapidjson_ep' -- rapidjson_ep install command succeeded. See also /tmp/Rtmp64sUMd/file553b4faa5f21/src/rapidjson_ep-stamp/rapidjson_ep-install-*.log [ 7%] Completed 'rapidjson_ep' [ 7%] Built target rapidjson_ep Scanning dependencies of target lz4_ep [ 7%] Creating directories for 'lz4_ep' [ 7%] Performing download step (download, verify and extract) for 'lz4_ep' -- lz4_ep download command succeeded. See also /tmp/Rtmp64sUMd/file553b4faa5f21/lz4_ep-prefix/src/lz4_ep-stamp/lz4_ep-download-*.log [ 7%] No patch step for 'lz4_ep' [ 8%] Performing update step for 'lz4_ep' [ 8%] No configure step for 'lz4_ep' [ 9%] Performing build step for 'lz4_ep' -- lz4_ep build command succeeded. See also /tmp/Rtmp64sUMd/file553b4faa5f21/lz4_ep-prefix/src/lz4_ep-stamp/lz4_ep-build-*.log [ 9%] No install step for 'lz4_ep' [ 10%] Completed 'lz4_ep' [ 10%] Built target lz4_ep Scanning dependencies of target xsimd_ep [ 10%] Creating directories for 'xsimd_ep' [ 10%] Performing download step (download, verify and extract) for 'xsimd_ep' -- xsimd_ep download command succeeded. See also /tmp/Rtmp64sUMd/file553b4faa5f21/src/xsimd_ep-stamp/xsimd_ep-download-*.log [ 10%] No patch step for 'xsimd_ep' [ 11%] No update step for 'xsimd_ep' [ 11%] Performing configure step for 'xsimd_ep' -- xsimd_ep configure command succeeded. See also /tmp/Rtmp64sUMd/file553b4faa5f21/src/xsimd_ep-stamp/xsimd_ep-configure-*.log [ 12%] Performing build step for 'xsimd_ep' -- xsimd_ep build command succeeded. See also /tmp/Rtmp64sUMd/file553b4faa5f21/src/xsimd_ep-stamp/xsimd_ep-build-*.log [ 13%] Performing install step for 'xsimd_ep' -- xsimd_ep install command succeeded. See also /tmp/Rtmp64sUMd/file553b4faa5f21/src/xsimd_ep-stamp/xsimd_ep-install-*.log [ 13%] Completed 'xsimd_ep' [ 13%] Built target xsimd_ep Scanning dependencies of target re2_ep [ 13%] Creating directories for 're2_ep' [ 13%] Performing download step (download, verify and extract) for 're2_ep' -- re2_ep download command succeeded. See also /tmp/Rtmp64sUMd/file553b4faa5f21/re2_ep-prefix/src/re2_ep-stamp/re2_ep-download-*.log [ 14%] No patch step for 're2_ep' [ 14%] No update step for 're2_ep' [ 14%] Performing configure step for 're2_ep' -- re2_ep configure command succeeded. See also /tmp/Rtmp64sUMd/file553b4faa5f21/re2_ep-prefix/src/re2_ep-stamp/re2_ep-configure-*.log [ 14%] Performing build step for 're2_ep' -- re2_ep build command succeeded. See also /tmp/Rtmp64sUMd/file553b4faa5f21/re2_ep-prefix/src/re2_ep-stamp/re2_ep-build-*.log [ 15%] Performing install step for 're2_ep' -- re2_ep install command succeeded. See also /tmp/Rtmp64sUMd/file553b4faa5f21/re2_ep-prefix/src/re2_ep-stamp/re2_ep-install-*.log [ 15%] Completed 're2_ep' [ 15%] Built target re2_ep CMake Error at boost_ep-stamp/boost_ep-download-RELEASE.cmake:16 (message): Command failed: 1 '/usr/bin/cmake' '-Dmake=' '-Dconfig=' '-P' '/tmp/Rtmp64sUMd/file553b4faa5f21/boost_ep-prefix/src/boost_ep-stamp/boost_ep-download-RELEASE-impl.cmake' See also /tmp/Rtmp64sUMd/file553b4faa5f21/boost_ep-prefix/src/boost_ep-stamp/boost_ep-download-*.log make[2]: *** [CMakeFiles/boost_ep.dir/build.make:90: boost_ep-prefix/src/boost_ep-stamp/boost_ep-download] Fehler 1 make[1]: *** [CMakeFiles/Makefile2:511: CMakeFiles/boost_ep.dir/all] Fehler 2 make: *** [Makefile:141: all] Fehler 2 **** Error building Arrow C++. ------------------------- NOTE --------------------------- There was an issue preparing the Arrow C++ libraries. See https://arrow.apache.org/docs/r/articles/install.html --------------------------------------------------------- ERROR: configuration failed for package ‘arrow’ * removing ‘/home/*/R/x86_64-pc-linux-gnu-library/4.2/arrow’ Warning in install.packages : Installation des Pakets ‘arrow’ hatte Exit-Status ungleich 0 Die heruntergeladenen Quellpakete sind in ‘/tmp/RtmpX7jQfI/downloaded_packages’