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  1. Apache Arrow
  2. ARROW-10856

[R] CentOS 7 not correctly identifying compiler version

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    Details

    • Type: Bug
    • Status: Resolved
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 3.0.0
    • Component/s: R

      Description

      When I tried to use the example command like this in my R session:

      df <- read_parquet(system.file("v0.7.1.parquet", package="arrow"))

       

      It shows error:

      > df <- read_parquet(system.file("v0.7.1.parquet", package="arrow"))
      Error in io___MemoryMappedFile__Open(path, mode) :
       Cannot call io___MemoryMappedFile__Open(). Please use arrow::install_arrow() to install required runtime libraries.

      I did try to install it with `arrow::install_arrow()` and it finishes successfully.

      However, I still get the same error message mentioned above after that.

      My session info is here:

       

      > sessioninfo::session_info()
      ─ Session info ───────────────────────────────────────────────────────────────
       setting value
       version R version 4.0.2 (2020-06-22)
       os CentOS Linux 7 (Core)
       system x86_64, linux-gnu
       ui X11
       language (EN)
       collate en_US.UTF-8
       ctype en_US.UTF-8
       tz America/Detroit
       date 2020-12-08
      ─ Packages ───────────────────────────────────────────────────────────────────
       package * version date lib source
       arrow * 2.0.0 2020-10-20 [1] CRAN (R 4.0.2)
       assertthat 0.2.1 2019-03-21 [1] CRAN (R 4.0.2)
       bit 4.0.4 2020-08-04 [1] CRAN (R 4.0.2)
       bit64 4.0.5 2020-08-30 [1] CRAN (R 4.0.2)
       cli 2.2.0 2020-11-20 [1] CRAN (R 4.0.2)
       crayon 1.3.4 2017-09-16 [1] CRAN (R 4.0.2)
       fansi 0.4.1 2020-01-08 [1] CRAN (R 4.0.2)
       glue 1.4.2 2020-08-27 [1] CRAN (R 4.0.2)
       magrittr 2.0.1 2020-11-17 [1] CRAN (R 4.0.2)
       purrr 0.3.4 2020-04-17 [1] CRAN (R 4.0.2)
       R6 2.5.0 2020-10-28 [1] CRAN (R 4.0.2)
       rlang 0.4.9 2020-11-26 [1] CRAN (R 4.0.2)
       sessioninfo 1.1.1 2018-11-05 [1] CRAN (R 4.0.2)
       tidyselect 1.1.0 2020-05-11 [1] CRAN (R 4.0.2)
       vctrs 0.3.5 2020-11-17 [1] CRAN (R 4.0.2)
       withr 2.3.0 2020-09-22 [1] CRAN (R 4.0.2)
      [1] /home/yihsiao/R/x86_64-pc-linux-gnu-library/4.0
      [2] /sw/arcts/centos7/stacks/gcc/8.2.0/R/4.0.2/lib64/R/library
      

       

      One thing I notice is that when installing the run time library, it doesn't get the correct compiler I have for C++ (8.2.0 rather than some version < 4.9)

       

      > arrow::install_arrow()
      Installing package into '/home/yihsiao/R/x86_64-pc-linux-gnu-library/4.0'
      (as 'lib' is unspecified)
      trying URL 'https://cloud.r-project.org/src/contrib/arrow_2.0.0.tar.gz'
      Content type 'application/x-gzip' length 322592 bytes (315 KB)
      ==================================================
      downloaded 315 KB
      * installing *source* package 'arrow' ...
      ** package 'arrow' successfully unpacked and MD5 sums checked
      ** using staged installation
      *** No C++ binaries found for centos-7
      *** Successfully retrieved C++ source
      *** Building C++ libraries
      **** cmake
      **** S3 support not available for gcc < 4.9; building with ARROW_S3=OFF
      **** arrow
      

       

       

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              • Assignee:
                jonkeane Jonathan Keane
                Reporter:
                yihsiao Yi Hsiao
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                  Resolved:

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