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  1. Ambari
  2. AMBARI-15282

Accumulo Service Check fails due to timeout after deployment

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Details

    • Bug
    • Status: Resolved
    • Major
    • Resolution: Fixed
    • None
    • 2.2.2
    • None
    • None

    Description

      After deployment accumulo service check is failing with the below error.

      {
      "href" : "https://172.22.118.198:8443/api/v1/clusters/cl1/requests/5/tasks/188",
      "Tasks" : {
      "attempt_cnt" : 1,
      "cluster_name" : "cl1",
      "command" : "SERVICE_CHECK",
      "command_detail" : "SERVICE_CHECK ACCUMULO",
      "end_time" : 1456880285591,
      "error_log" : "/var/lib/ambari-agent/data/errors-188.txt",
      "exit_code" : 1,
      "host_name" : "os-r6-ucmvau-ambari-us-21nf-3-5.novalocal",
      "id" : 188,
      "output_log" : "/var/lib/ambari-agent/data/output-188.txt",
      "request_id" : 5,
      "role" : "ACCUMULO_SERVICE_CHECK",
      "stage_id" : 5,
      "start_time" : 1456880242827,
      "status" : "FAILED",
      "stderr" : "Traceback (most recent call last):\n File \"/var/lib/ambari-agent/cache/common-services/ACCUMULO/1.6.1.2.2.0/package/scripts/service_check.py\", line 64, in <module>\n AccumuloServiceCheck().execute()\n File \"/usr/lib/python2.6/site-packages/resource_management/libraries/script/script.py\", line 219, in execute\n method(env)\n File \"/var/lib/ambari-agent/cache/common-services/ACCUMULO/1.6.1.2.2.0/package/scripts/service_check.py\", line 53, in service_check\n logoutput=True)\n File \"/usr/lib/python2.6/site-packages/resource_management/core/base.py\", line 154, in _init_\n self.env.run()\n File \"/usr/lib/python2.6/site-packages/resource_management/core/environment.py\", line 158, in run\n self.run_action(resource, action)\n File \"/usr/lib/python2.6/site-packages/resource_management/core/environment.py\", line 121, in run_action\n provider_action()\n File \"/usr/lib/python2.6/site-packages/resource_management/core/providers/system.py\", line 238, in action_run\n tries=self.resource.tries, try_sleep=self.resource.try_sleep)\n File \"/usr/lib/python2.6/site-packages/resource_management/core/shell.py\", line 70, in inner\n result = function(command, *kwargs)\n File \"/usr/lib/python2.6/site-packages/resource_management/core/shell.py\", line 92, in checked_call\n tries=tries, try_sleep=try_sleep)\n File \"/usr/lib/python2.6/site-packages/resource_management/core/shell.py\", line 140, in _call_wrapper\n result = _call(command, **kwargs_copy)\n File \"/usr/lib/python2.6/site-packages/resource_management/core/shell.py\", line 285, in _call\n raise ExecuteTimeoutException(err_msg)\nresource_management.core.exceptions.ExecuteTimeoutException: Execution of 'ambari-sudo.sh su ambari-qa -l -s /bin/bash -c 'export PATH='\"'\"'/usr/sbin:/sbin:/usr/lib/ambari-server/:/usr/lib64/qt-3.3/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/agentslava/bin:/var/lib/ambari-agent'\"'\"' ; /usr/hdp/current/accumulo-client/bin/accumulo shell -u ambari-qa -p smoke -f /var/lib/ambari-agent/tmp/cmds'' was killed due timeout after 30 seconds",
      "stdout" : "2016-03-02 00:57:33,504 - Using hadoop conf dir: /usr/hdp/current/hadoop-client/conf\n2016-03-02 00:57:33,512 - File['/var/lib/ambari-agent/tmp/cmds']

      {'content': InlineTemplate(...), 'owner': 'ambari-qa', 'group': 'hadoop', 'mode': 0600}

      \n2016-03-02 00:57:33,578 - Writing File['/var/lib/ambari-agent/tmp/cmds'] because it doesn't exist\n2016-03-02 00:57:33,627 - Changing owner for /var/lib/ambari-agent/tmp/cmds from 0 to ambari-qa\n2016-03-02 00:57:33,628 - Changing group for /var/lib/ambari-agent/tmp/cmds from 0 to hadoop\n2016-03-02 00:57:33,667 - Changing permission for /var/lib/ambari-agent/tmp/cmds from 640 to 600\n2016-03-02 00:57:33,689 - Execute['/usr/hdp/current/accumulo-client/bin/accumulo shell -u ambari-qa -p smoke -f /var/lib/ambari-agent/tmp/cmds']

      {'logoutput': True, 'user': 'ambari-qa', 'timeout': 30}

      \n######## Hortonworks #############\nThis is MOTD message, added for testing in qe infra\n2016-03-02 00:57:36,175 [trace.DistributedTrace] INFO : SpanReceiver org.apache.accumulo.tracer.ZooTraceClient was loaded successfully.\nrow cf:cq [] val\n2016-03-02 00:57:38,606 [shell.Shell] INFO : Flush of table testtable completed.\nrow cf:cq [] val",
      "structured_out" : { }
      }

      This issue is intermittent and is not reproduced in all the runs
      Noticed the below in accumulo logs

      2016-03-02 01:07:51,101 [tserver.TabletServer] INFO : Waiting for tablet server lock
      2016-03-02 01:07:52,654 [tserver.TabletServer] WARN : Got getScans message from master before lock acquired, ignoring...
      2016-03-02 01:07:52,659 [tserver.TabletServer$ThriftClientHandler] ERROR: Lock not acquired
      java.lang.RuntimeException: Lock not acquired
      at org.apache.accumulo.tserver.TabletServer$ThriftClientHandler.checkPermission(TabletServer.java:1410)
      at org.apache.accumulo.tserver.TabletServer$ThriftClientHandler.getActiveScans(TabletServer.java:1632)
      at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
      at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
      at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
      at java.lang.reflect.Method.invoke(Method.java:497)
      at org.apache.accumulo.core.trace.wrappers.RpcServerInvocationHandler.invoke(RpcServerInvocationHandler.java:39)
      at org.apache.accumulo.server.rpc.RpcWrapper$1.invoke(RpcWrapper.java:73)
      at com.sun.proxy.$Proxy21.getActiveScans(Unknown Source)
      at org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2864)
      at org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2848)
      at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
      at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
      at org.apache.accumulo.server.rpc.TimedProcessor.process(TimedProcessor.java:63)
      at org.apache.thrift.server.AbstractNonblockingServer$FrameBuffer.invoke(AbstractNonblockingServer.java:516)
      at org.apache.accumulo.server.rpc.CustomNonBlockingServer$1.run(CustomNonBlockingServer.java:78)
      at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
      at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
      at org.apache.accumulo.fate.util.LoggingRunnable.run(LoggingRunnable.java:35)
      at java.lang.Thread.run(Thread.java:745)
      2016-03-02 01:07:52,668 [thrift.ProcessFunction] ERROR: Internal error processing getActiveScans
      org.apache.thrift.TException: Lock not acquired
      at org.apache.accumulo.server.rpc.RpcWrapper$1.invoke(RpcWrapper.java:80)
      at com.sun.proxy.$Proxy21.getActiveScans(Unknown Source)
      at org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2864)
      at org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2848)
      at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
      at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
      at org.apache.accumulo.server.rpc.TimedProcessor.process(TimedProcessor.java:63)
      at org.apache.thrift.server.AbstractNonblockingServer$FrameBuffer.invoke(AbstractNonblockingServer.java:516)
      at org.apache.accumulo.server.rpc.CustomNonBlockingServer$1.run(CustomNonBlockingServer.java:78)
      at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
      at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
      at org.apache.accumulo.fate.util.LoggingRunnable.run(LoggingRunnable.java:35)
      at java.lang.Thread.run(Thread.java:745)
      2016-03-02 01:07:56,118 [tserver.TabletServer] INFO : Waiting for tablet server lock
      2016-03-02 01:07:57,706 [tserver.TabletServer] WARN : Got getScans message from master before lock acquired, ignoring...
      2016-03-02 01:07:57,707 [tserver.TabletServer$ThriftClientHandler] ERROR: Lock not acquired
      java.lang.RuntimeException: Lock not acquired
      at org.apache.accumulo.tserver.TabletServer$ThriftClientHandler.checkPermission(TabletServer.java:1410)
      at org.apache.accumulo.tserver.TabletServer$ThriftClientHandler.getActiveScans(TabletServer.java:1632)
      at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
      at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
      at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
      at java.lang.reflect.Method.invoke(Method.java:497)
      at org.apache.accumulo.core.trace.wrappers.RpcServerInvocationHandler.invoke(RpcServerInvocationHandler.java:39)
      at org.apache.accumulo.server.rpc.RpcWrapper$1.invoke(RpcWrapper.java:73)
      at com.sun.proxy.$Proxy21.getActiveScans(Unknown Source)
      at org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2864)
      at org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2848)
      at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
      at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
      at org.apache.accumulo.server.rpc.TimedProcessor.process(TimedProcessor.java:63)
      at org.apache.thrift.server.AbstractNonblockingServer$FrameBuffer.invoke(AbstractNonblockingServer.java:516)
      at org.apache.accumulo.server.rpc.CustomNonBlockingServer$1.run(CustomNonBlockingServer.java:78)
      at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
      at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
      at org.apache.accumulo.fate.util.LoggingRunnable.run(LoggingRunnable.java:35)
      at java.lang.Thread.run(Thread.java:745)
      2016-03-02 01:07:57,710 [thrift.ProcessFunction] ERROR: Internal error processing getActiveScans
      org.apache.thrift.TException: Lock not acquired
      at org.apache.accumulo.server.rpc.RpcWrapper$1.invoke(RpcWrapper.java:80)
      at com.sun.proxy.$Proxy21.getActiveScans(Unknown Source)
      at org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2864)
      at org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2848)
      at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
      at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
      at org.apache.accumulo.server.rpc.TimedProcessor.process(TimedProcessor.java:63)
      at org.apache.thrift.server.AbstractNonblockingServer$FrameBuffer.invoke(AbstractNonblockingServer.java:516)
      at org.apache.accumulo.server.rpc.CustomNonBlockingServer$1.run(CustomNonBlockingServer.java:78)
      at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
      at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
      at org.apache.accumulo.fate.util.LoggingRunnable.run(LoggingRunnable.java:35)
      at java.lang.Thread.run(Thread.java:745)
      2016-03-02 01:08:01,137 [tserver.TabletServer] INFO : Waiting for tablet server lock
      2016-03-02 01:08:02,730 [tserver.TabletServer] WARN : Got getScans message from master before lock acquired, ignoring...
      2016-03-02 01:08:02,731 [tserver.TabletServer$ThriftClientHandler] ERROR: Lock not acquired
      java.lang.RuntimeException: Lock not acquired
      at org.apache.accumulo.tserver.TabletServer$ThriftClientHandler.checkPermission(TabletServer.java:1410)
      at org.apache.accumulo.tserver.TabletServer$ThriftClientHandler.getActiveScans(TabletServer.java:1632)
      at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
      at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
      at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
      at java.lang.reflect.Method.invoke(Method.java:497)
      at org.apache.accumulo.core.trace.wrappers.RpcServerInvocationHandler.invoke(RpcServerInvocationHandler.java:39)
      at org.apache.accumulo.server.rpc.RpcWrapper$1.invoke(RpcWrapper.java:73)
      at com.sun.proxy.$Proxy21.getActiveScans(Unknown Source)
      at org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2864)
      at org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2848)
      at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
      at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
      at org.apache.accumulo.server.rpc.TimedProcessor.process(TimedProcessor.java:63)
      at org.apache.thrift.server.AbstractNonblockingServer$FrameBuffer.invoke(AbstractNonblockingServer.java:516)
      at org.apache.accumulo.server.rpc.CustomNonBlockingServer$1.run(CustomNonBlockingServer.java:78)
      at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
      at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
      at org.apache.accumulo.fate.util.LoggingRunnable.run(LoggingRunnable.java:35)
      at java.lang.Thread.run(Thread.java:745)
      2016-03-02 01:08:02,732 [thrift.ProcessFunction] ERROR: Internal error processing getActiveScans
      org.apache.thrift.TException: Lock not acquired
      at org.apache.accumulo.server.rpc.RpcWrapper$1.invoke(RpcWrapper.java:80)
      at com.sun.proxy.$Proxy21.getActiveScans(Unknown Source)
      at org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2864)
      at org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2848)
      at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
      at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
      at org.apache.accumulo.server.rpc.TimedProcessor.process(TimedProcessor.java:63)
      at org.apache.thrift.server.AbstractNonblockingServer$FrameBuffer.invoke(AbstractNonblockingServer.java:516)
      at org.apache.accumulo.server.rpc.CustomNonBlockingServer$1.run(CustomNonBlockingServer.java:78)
      at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
      at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
      at org.apache.accumulo.fate.util.LoggingRunnable.run(LoggingRunnable.java:35)
      at java.lang.Thread.run(Thread.java:745)
      2016-03-02 01:08:06,162 [tserver.TabletServer] INFO : Waiting for tablet server lock
      2016-03-02 01:08:07,754 [tserver.TabletServer] WARN : Got getScans message from master before lock acquired, ignoring...
      2016-03-02 01:08:07,755 [tserver.TabletServer$ThriftClientHandler] ERROR: Lock not acquired
      java.lang.RuntimeException: Lock not acquired
      at org.apache.accumulo.tserver.TabletServer$ThriftClientHandler.checkPermission(TabletServer.java:1410)
      at org.apache.accumulo.tserver.TabletServer$ThriftClientHandler.getActiveScans(TabletServer.java:1632)
      at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
      at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
      at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
      at java.lang.reflect.Method.invoke(Method.java:497)
      at org.apache.accumulo.core.trace.wrappers.RpcServerInvocationHandler.invoke(RpcServerInvocationHandler.java:39)
      at org.apache.accumulo.server.rpc.RpcWrapper$1.invoke(RpcWrapper.java:73)
      at com.sun.proxy.$Proxy21.getActiveScans(Unknown Source)
      at org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2864)
      at org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2848)
      at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
      at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
      at org.apache.accumulo.server.rpc.TimedProcessor.process(TimedProcessor.java:63)
      at org.apache.thrift.server.AbstractNonblockingServer$FrameBuffer.invoke(AbstractNonblockingServer.java:516)
      at org.apache.accumulo.server.rpc.CustomNonBlockingServer$1.run(CustomNonBlockingServer.java:78)
      at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
      at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
      at org.apache.accumulo.fate.util.LoggingRunnable.run(LoggingRunnable.java:35)
      at java.lang.Thread.run(Thread.java:745)
      2016-03-02 01:08:07,759 [thrift.ProcessFunction] ERROR: Internal error processing getActiveScans
      org.apache.thrift.TException: Lock not acquired
      at org.apache.accumulo.server.rpc.RpcWrapper$1.invoke(RpcWrapper.java:80)
      at com.sun.proxy.$Proxy21.getActiveScans(Unknown Source)
      at org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2864)
      at org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2848)
      at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
      at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
      at org.apache.accumulo.server.rpc.TimedProcessor.process(TimedProcessor.java:63)
      at org.apache.thrift.server.AbstractNonblockingServer$FrameBuffer.invoke(AbstractNonblockingServer.java:516)
      at org.apache.accumulo.server.rpc.CustomNonBlockingServer$1.run(CustomNonBlockingServer.java:78)
      at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
      at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
      at org.apache.accumulo.fate.util.LoggingRunnable.run(LoggingRunnable.java:35)
      at java.lang.Thread.run(Thread.java:745)
      2016-03-02 01:08:11,247 [tserver.TabletServer] INFO : Started replication service on os-r6-ucmvau-ambari-us-21nf-3-5.novalocal:10002
      2016-03-02 01:17:49,532 [server.Accumulo] WARN : System swappiness setting is greater than ten (60) which can cause time-sensitive operations to be delayed. Accumulo is time sensitive because it needs to maintain distributed lock agreement.

      Please help take a look so that we can avoid this intermittent issues as well.

      Attachments

        1. AMBARI-15282.patch
          1 kB
          Andrew Onischuk

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              aonishuk Andrew Onischuk
              aonishuk Andrew Onischuk
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                Updated:
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