[AIRAVATA-2621] SSH port provided in compute resource registration is not considered for cluster SSH communication

• Type: Bug
• Status: Closed
• Priority: Major
• Resolution: Fixed
• Affects Version/s: 0.18
• Fix Version/s: 0.18
• Component/s: GFac
• Environment: https://hpcgateway.gsu.edu/ ; https://scigap.org/
• Assignee: Dimuthu
• Reporter: Eroma
• Created: 19/Dec/17 16:40
• Updated: 22/Feb/18 17:01
• Resolved: 17/Jan/18 19:03

Description

1. Added a specific port for job submissions (15022)
2. But when submitting jobs, for environment creation, the gfac is using the default 22 port, not the specified one in scigap.org for hpclogin.gsu.edu.

3. log messages in airavata log
2017-12-19 11:13:18,996 [pool-7-thread-2] INFO o.a.airavata.gfac.impl.Factory process_id=PROCESS_3b471b3b-5b4e-4b6d-a66e-554652a390d2, token_id=35da840b-63d5-4cbf-b9ce-3005cd94d961, experiment_id=NWChem2_a38ac303-666f-4dea-9b4c-7bffe0f97dd7, gateway_id=georgiastate - Initialize a new SSH session for :airavata_hpclogin.gsu.edu_22_35da840b-63d5-4cbf-b9ce-3005cd94d961

2017-12-19 11:15:26,272 [pool-7-thread-2] ERROR o.a.a.gfac.core.GFacException process_id=PROCESS_3b471b3b-5b4e-4b6d-a66e-554652a390d2, token_id=35da840b-63d5-4cbf-b9ce-3005cd94d961, experiment_id=NWChem2_a38ac303-666f-4dea-9b4c-7bffe0f97dd7, gateway_id=georgiastate - JSch initialization error
com.jcraft.jsch.JSchException: java.net.ConnectException: Connection timed out (Connection timed out)
at com.jcraft.jsch.Util.createSocket(Util.java:349)
at com.jcraft.jsch.Session.connect(Session.java:215)
at com.jcraft.jsch.Session.connect(Session.java:183)
at org.apache.airavata.gfac.impl.Factory.getSSHSession(Factory.java:542)
at org.apache.airavata.gfac.impl.HPCRemoteCluster.getSshSession(HPCRemoteCluster.java:138)
at org.apache.airavata.gfac.impl.HPCRemoteCluster.getSession(HPCRemoteCluster.java:315)
at org.apache.airavata.gfac.impl.HPCRemoteCluster.makeDirectory(HPCRemoteCluster.java:242)
at org.apache.airavata.gfac.impl.task.EnvironmentSetupTask.execute(EnvironmentSetupTask.java:51)
at org.apache.airavata.gfac.impl.GFacEngineImpl.executeTask(GFacEngineImpl.java:814)
at org.apache.airavata.gfac.impl.GFacEngineImpl.configureWorkspace(GFacEngineImpl.java:553)
at org.apache.airavata.gfac.impl.GFacEngineImpl.executeTaskListFrom(GFacEngineImpl.java:324)
at org.apache.airavata.gfac.impl.GFacEngineImpl.executeProcess(GFacEngineImpl.java:286)
at org.apache.airavata.gfac.impl.GFacWorker.executeProcess(GFacWorker.java:227)
at org.apache.airavata.gfac.impl.GFacWorker.run(GFacWorker.java:86)
at org.apache.airavata.common.logging.MDCUtil.lambda$wrapWithMDC$0(MDCUtil.java:40)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.net.ConnectException: Connection timed out (Connection timed out)
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at java.net.Socket.connect(Socket.java:538)
at java.net.Socket.<init>(Socket.java:434)
at java.net.Socket.<init>(Socket.java:211)
at com.jcraft.jsch.Util.createSocket(Util.java:343)
... 17 common frames omitted
?NWChem2_a38ac303-666f-4dea-9b4c-7bffe0f97dd7

Issue Links

• links to: GitHub Pull Request #160