[SPARK-15343] NoClassDefFoundError when initializing Spark with YARN

• Type: Bug
• Status: Resolved
• Priority: Critical
• Resolution: Not A Problem
• Affects Version/s: 2.0.0
• Component/s: Spark Core, YARN
• Assignee: Unassigned
• Reporter: Maciej Bryński
• Created: 16/May/16 11:59
• Updated: 17/May/20 18:15
• Resolved: 16/May/16 18:19

Description

I'm trying to connect Spark 2.0 (compiled from branch-2.0) with Hadoop.

Spark compiled with:

./dev/make-distribution.sh -Pyarn -Phadoop-2.6 -Phive -Phive-thriftserver -Dhadoop.version=2.6.0 -DskipTests

I'm getting following error

mbrynski@jupyter:~/spark$ bin/pyspark
Python 3.4.0 (default, Apr 11 2014, 13:05:11)
[GCC 4.8.2] on linux
Type "help", "copyright", "credits" or "license" for more information.
Warning: Master yarn-client is deprecated since 2.0. Please use master "yarn" with specified deploy mode instead.
Setting default log level to "WARN".
To adjust logging level use sc.setLogLevel(newLevel).
16/05/16 11:54:41 WARN SparkConf: The configuration key 'spark.yarn.jar' has been deprecated as of Spark 2.0 and may be removed in the future. Please use the new key 'spark.yarn.jars' instead.
16/05/16 11:54:41 WARN NativeCodeLoader: Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
16/05/16 11:54:42 WARN AbstractHandler: No Server set for org.spark_project.jetty.server.handler.ErrorHandler@f7989f6
16/05/16 11:54:43 WARN DomainSocketFactory: The short-circuit local reads feature cannot be used because libhadoop cannot be loaded.
Traceback (most recent call last):
  File "/home/mbrynski/spark/python/pyspark/shell.py", line 38, in <module>
    sc = SparkContext()
  File "/home/mbrynski/spark/python/pyspark/context.py", line 115, in __init__
    conf, jsc, profiler_cls)
  File "/home/mbrynski/spark/python/pyspark/context.py", line 172, in _do_init
    self._jsc = jsc or self._initialize_context(self._conf._jconf)
  File "/home/mbrynski/spark/python/pyspark/context.py", line 235, in _initialize_context
    return self._jvm.JavaSparkContext(jconf)
  File "/home/mbrynski/spark/python/lib/py4j-0.10.1-src.zip/py4j/java_gateway.py", line 1183, in __call__
  File "/home/mbrynski/spark/python/lib/py4j-0.10.1-src.zip/py4j/protocol.py", line 312, in get_return_value
py4j.protocol.Py4JJavaError: An error occurred while calling None.org.apache.spark.api.java.JavaSparkContext.
: java.lang.NoClassDefFoundError: com/sun/jersey/api/client/config/ClientConfig
        at org.apache.hadoop.yarn.client.api.TimelineClient.createTimelineClient(TimelineClient.java:45)
        at org.apache.hadoop.yarn.client.api.impl.YarnClientImpl.serviceInit(YarnClientImpl.java:163)
        at org.apache.hadoop.service.AbstractService.init(AbstractService.java:163)
        at org.apache.spark.deploy.yarn.Client.submitApplication(Client.scala:150)
        at org.apache.spark.scheduler.cluster.YarnClientSchedulerBackend.start(YarnClientSchedulerBackend.scala:56)
        at org.apache.spark.scheduler.TaskSchedulerImpl.start(TaskSchedulerImpl.scala:148)
        at org.apache.spark.SparkContext.<init>(SparkContext.scala:502)
        at org.apache.spark.api.java.JavaSparkContext.<init>(JavaSparkContext.scala:58)
        at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
        at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
        at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
        at java.lang.reflect.Constructor.newInstance(Constructor.java:422)
        at py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:240)
        at py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:357)
        at py4j.Gateway.invoke(Gateway.java:236)
        at py4j.commands.ConstructorCommand.invokeConstructor(ConstructorCommand.java:80)
        at py4j.commands.ConstructorCommand.execute(ConstructorCommand.java:69)
        at py4j.GatewayConnection.run(GatewayConnection.java:211)
        at java.lang.Thread.run(Thread.java:745)
Caused by: java.lang.ClassNotFoundException: com.sun.jersey.api.client.config.ClientConfig
        at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
        at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
        at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:331)
        at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
        ... 19 more

On 1.6 everything works fine. I'm using HDP2.2 (Hadoop 2.6.0)
I have HADOOP_CONF_DIR and SPARK_HOME env variables.

Issue Links

• is broken by: YARN-5271 ATS client doesn't work with Jersey 2 on the classpath
• is related to: SPARK-12154 Upgrade to Jersey 2
• links to: GitHub Pull Request #1011