[SPARK-10722] Uncaught exception: RDDBlockId not found in driver-heartbeater

• Type: Bug
• Status: Resolved
• Priority: Major
• Resolution: Fixed
• Affects Version/s: 1.3.1, 1.4.1, 1.5.0
• Fix Version/s: 1.6.2
• Component/s: Block Manager, Spark Core
• Assignee: Simon Scott
• Reporter: Simeon Simeonov
• Created: 21/Sep/15 02:46
• Updated: 17/May/20 18:21
• Resolved: 26/May/16 13:13

Description

Some operations involving cached RDDs generate an uncaught exception in driver-heartbeater. If the .cache() call is removed, processing happens without the exception. However, not all RDDs trigger the problem, i.e., some .cache() operations are fine.

I can see the problem with 1.4.1 and 1.5.0 but I have not been able to create a reproducible test case. The same exception is reported on SO for v1.3.1 but the behavior is related to large broadcast variables.

The full stack trace is:

15/09/20 22:10:08 ERROR Utils: Uncaught exception in thread driver-heartbeater
java.io.IOException: java.lang.ClassNotFoundException: org.apache.spark.storage.RDDBlockId
  at org.apache.spark.util.Utils$.tryOrIOException(Utils.scala:1163)
  at org.apache.spark.executor.TaskMetrics.readObject(TaskMetrics.scala:219)
  at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
  at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
  at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
  at java.lang.reflect.Method.invoke(Method.java:606)
  at java.io.ObjectStreamClass.invokeReadObject(ObjectStreamClass.java:1017)
  at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1893)
  at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1798)
  at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1350)
  at java.io.ObjectInputStream.readObject(ObjectInputStream.java:370)
  at org.apache.spark.util.Utils$.deserialize(Utils.scala:91)
  at org.apache.spark.executor.Executor$$anonfun$org$apache$spark$executor$Executor$$reportHeartBeat$1$$anonfun$apply$6.apply(Executor.scala:440)
  at org.apache.spark.executor.Executor$$anonfun$org$apache$spark$executor$Executor$$reportHeartBeat$1$$anonfun$apply$6.apply(Executor.scala:430)
  at scala.Option.foreach(Option.scala:236)
  at org.apache.spark.executor.Executor$$anonfun$org$apache$spark$executor$Executor$$reportHeartBeat$1.apply(Executor.scala:430)
  at org.apache.spark.executor.Executor$$anonfun$org$apache$spark$executor$Executor$$reportHeartBeat$1.apply(Executor.scala:428)
  at scala.collection.Iterator$class.foreach(Iterator.scala:727)
  at scala.collection.AbstractIterator.foreach(Iterator.scala:1157)
  at scala.collection.IterableLike$class.foreach(IterableLike.scala:72)
  at scala.collection.AbstractIterable.foreach(Iterable.scala:54)
  at org.apache.spark.executor.Executor.org$apache$spark$executor$Executor$$reportHeartBeat(Executor.scala:428)
  at org.apache.spark.executor.Executor$$anon$1$$anonfun$run$1.apply$mcV$sp(Executor.scala:472)
  at org.apache.spark.executor.Executor$$anon$1$$anonfun$run$1.apply(Executor.scala:472)
  at org.apache.spark.executor.Executor$$anon$1$$anonfun$run$1.apply(Executor.scala:472)
  at org.apache.spark.util.Utils$.logUncaughtExceptions(Utils.scala:1699)
  at org.apache.spark.executor.Executor$$anon$1.run(Executor.scala:472)
  at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471)
  at java.util.concurrent.FutureTask.runAndReset(FutureTask.java:304)
  at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(ScheduledThreadPoolExecutor.java:178)
  at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:293)
  at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
  at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
  at java.lang.Thread.run(Thread.java:744)
Caused by: java.lang.ClassNotFoundException: org.apache.spark.storage.RDDBlockId
  at java.net.URLClassLoader$1.run(URLClassLoader.java:366)
  at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
  at java.security.AccessController.doPrivileged(Native Method)
  at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
  at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
  at java.lang.Class.forName0(Native Method)
  at java.lang.Class.forName(Class.java:270)
  at java.io.ObjectInputStream.resolveClass(ObjectInputStream.java:625)
  at java.io.ObjectInputStream.readNonProxyDesc(ObjectInputStream.java:1612)
  at java.io.ObjectInputStream.readClassDesc(ObjectInputStream.java:1517)
  at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1771)
  at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1350)
  at java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1990)
  at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1915)
  at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1798)
  at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1350)
  at java.io.ObjectInputStream.readObject(ObjectInputStream.java:370)
  at scala.collection.immutable.$colon$colon.readObject(List.scala:362)
  at sun.reflect.GeneratedMethodAccessor16.invoke(Unknown Source)
  at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
  at java.lang.reflect.Method.invoke(Method.java:606)
  at java.io.ObjectStreamClass.invokeReadObject(ObjectStreamClass.java:1017)
  at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1893)
  at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1798)
  at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1350)
  at java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1990)
  at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1915)
  at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1798)
  at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1350)
  at java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1990)
  at java.io.ObjectInputStream.defaultReadObject(ObjectInputStream.java:500)
  at org.apache.spark.executor.TaskMetrics$$anonfun$readObject$1.apply$mcV$sp(TaskMetrics.scala:220)
  at org.apache.spark.util.Utils$.tryOrIOException(Utils.scala:1160)
  ... 33 more

Issue Links

• is duplicated by: SPARK-15403 LinearRegressionWithSGD fails on files more than 12Mb data
• links to: [Github] Pull Request #13222 (simonjscott)