Crawl crashes with java.io.IOException: already exists: C:\nutch\crawl.intranet\oct18\db\webdb.new\pagesByURL

• Key: NUTCH-117
• Type: Bug
• Status: Closed
• Resolution: Fixed
• Priority: Critical
• Assignee: Piotr Kosiorowski
• Reporter: Stephen Cross
• Affects Version/s: 0.6, 0.7, 0.7.1
• Fix Version/s: 0.7.2

Environment

Window 2000 P4 1.70GHz 512MB RAM
Java 1.5.0_05

Description

I started a crawl using the command line using nutch 0.7.1.

nutch-daemon.sh start crawl urls.txt -dir oct18 -threads 4 -depth 20

After crawling for over 15 hours the crawl crached with the following exception:

051019 050543 status: segment 20051019050438, 30 pages, 0 errors, 1589818 bytes, 48020 ms
051019 050543 status: 0.6247397 pages/s, 258.65167 kb/s, 52993.934 bytes/page
051019 050544 Updating C:\nutch\crawl.intranet\oct18\db
051019 050544 Updating for C:\nutch\crawl.intranet\oct18\segments\20051019050438
051019 050544 Processing document 0
051019 050544 Finishing update
051019 050544 Processing pagesByURL: Sorted 47 instructions in 0.02 seconds.
051019 050544 Processing pagesByURL: Sorted 2350.0 instructions/second
Exception in thread "main" java.io.IOException: already exists: C:\nutch\crawl.intranet\oct18\db\webdb.new\pagesByURL
at org.apache.nutch.io.MapFile$Writer.<init>(MapFile.java:86)
at org.apache.nutch.db.WebDBWriter$CloseProcessor.closeDown(WebDBWriter.java:549)
at org.apache.nutch.db.WebDBWriter.close(WebDBWriter.java:1544)
at org.apache.nutch.tools.UpdateDatabaseTool.close(UpdateDatabaseTool.java:321)
at org.apache.nutch.tools.UpdateDatabaseTool.main(UpdateDatabaseTool.java:371)
at org.apache.nutch.tools.CrawlTool.main(CrawlTool.java:141)

This was on the 14th segement from the requested depth of 20. Doing a quick Google on the exception brings up a few previous posts with the same error but no definitive answer, seems to have been occuring since nutch 0.6.

Comments

[Nick Jacobsen]

I had a similar issue, and it seems (guessing here) to be related to some sort of race condition on filehandles. I was running the nutch crawler while doing some heavy processing (compiling java on OpenBSD in a virtual machine), and 19 out of 20 times, nutch would crash with that or a similar error - always related to some sort of file not found, and sometimes access denied. As soon as I stopped doing heavy processing, my nutch errors went down to 1 out of every 20 runs.

Based on this, I have come to the above conslusion that it is some sort of file handle race condition - also, for those of you wondering, it did not matter if I was running 1 or 30 threads, I had the same problems.

Hope this helps a little.

[Stephen Cross]

I think this is the same problem as a couple of other Nutch issues already in Jira

NUTCH-94: MapFile.Writer throwing 'File exists error'
http://issues.apache.org/jira/browse/NUTCH-94

NUTCH-96: MapFile.Writer throws directory exists exception if run multiple times in the same JVM or server JVM
http://issues.apache.org/jira/browse/NUTCH-96

[Spike Wang]

I have the same problem when running the crawling functionality of Nutch 7.0 in WAS5.1 using IBM JDK 1.4 . But it runs very well at tomcat 5.0.28 using Sun JDK 1.4 .

Exception in thread "main" java.io.IOException: already exists: %CRAWL_RESULT_HOME%\db\webdb.new\pagesByURL
at org.apache.nutch.io.MapFile$Writer.<init>(MapFile.java:86)
at org.apache.nutch.db.WebDBWriter$CloseProcessor.closeDown(WebDBWriter.java:549)
at org.apache.nutch.db.WebDBWriter.close(WebDBWriter.java:1544)
at org.apache.nutch.tools.UpdateDatabaseTool.close(UpdateDatabaseTool.java:321)
at org.apache.nutch.tools.UpdateDatabaseTool.main(UpdateDatabaseTool.java:371)
at org.apache.nutch.tools.CrawlTool.main(CrawlTool.java:141)

I check and debug the code and find these relative files have not be release when delete these files.
I may be add a evaluated patch to solve this problem .

[Mike Alulin]

I have same issue in my new production system, although same code works on dev and old production without any problems.

The solution for this bug is uncommenting "pageDb.close();" in the WebDBWriter.java file. Otherwise the reader locks the webdb.new\pagesByURL\data file and it cannot be deleted sometimes.

[Piotr Kosiorowski]

Applied fixed by Mike. Also reported offlist by Michal Karwanski.