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  1. Zeppelin
  2. ZEPPELIN-3939

Spark 2.4 incompatibility with commons-lang3 in Zeppelin

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      Hi,

      I have built Zeppelin in my Cloudera 6.1 cluster for Spark 2.4 (Hadoop 3.0) and everything went well with the support of Spark 2.4. 

      However, I can't read JSON nor CSV files due to the following error:

       

      java.io.InvalidClassException: org.apache.commons.lang3.time.FastDateParser; local class incompatible 
      

       

       

      org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in stage 4.0 failed 4 times, most recent failure: Lost task 0.3 in stage 4.0 (TID 117, hadoop-16, executor 3): java.io.InvalidClassException: org.apache.commons.lang3.time.FastDateParser; local class incompatible: stream classdesc serialVersionUID = 2, local class serialVersionUID = 3 at java.io.ObjectStreamClass.initNonProxy(ObjectStreamClass.java:699) at java.io.ObjectInputStream.readNonProxyDesc(ObjectInputStream.java:1885) at java.io.ObjectInputStream.readClassDesc(ObjectInputStream.java:1751) at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2042) at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1573) at java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:2287) at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:2211) at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2069) at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1573) at java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:2287) at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:2211) at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2069) at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1573) at java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:2287) at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:2211) at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2069) at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1573) at java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:2287) at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:2211) at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2069) at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1573) at java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:2287) at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:2211) at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2069) at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1573) at java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:2287) at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:2211) at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2069) at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1573) at java.io.ObjectInputStream.readObject(ObjectInputStream.java:431) at scala.collection.immutable.List$SerializationProxy.readObject(List.scala:490) at sun.reflect.GeneratedMethodAccessor4.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at java.io.ObjectStreamClass.invokeReadObject(ObjectStreamClass.java:1170) at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:2178) at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2069) at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1573) at java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:2287) at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:2211) at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2069) at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1573) at java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:2287) at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:2211) at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2069) at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1573) at java.io.ObjectInputStream.readObject(ObjectInputStream.java:431) at scala.collection.immutable.List$SerializationProxy.readObject(List.scala:490) at sun.reflect.GeneratedMethodAccessor4.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at java.io.ObjectStreamClass.invokeReadObject(ObjectStreamClass.java:1170) at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:2178) at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2069) at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1573) at java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:2287) at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:2211) at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2069) at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1573) at java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:2287) at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:2211) at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2069) at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1573) at java.io.ObjectInputStream.readObject(ObjectInputStream.java:431) at scala.collection.immutable.List$SerializationProxy.readObject(List.scala:490) at sun.reflect.GeneratedMethodAccessor4.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at java.io.ObjectStreamClass.invokeReadObject(ObjectStreamClass.java:1170) at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:2178) at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2069) at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1573) at java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:2287) at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:2211) at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2069) at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1573) at java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:2287) at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:2211) at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2069) at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1573) at java.io.ObjectInputStream.readObject(ObjectInputStream.java:431) at org.apache.spark.serializer.JavaDeserializationStream.readObject(JavaSerializer.scala:75) at org.apache.spark.serializer.JavaSerializerInstance.deserialize(JavaSerializer.scala:114) at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:83) at org.apache.spark.scheduler.Task.run(Task.scala:121) at org.apache.spark.executor.Executor$TaskRunner$$anonfun$11.apply(Executor.scala:407) at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:413) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:748) Driver stacktrace: at org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1890) at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1878) at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1877) at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59) at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:48) at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1877) at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:929) at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:929) at scala.Option.foreach(Option.scala:257) at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:929) at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:2111) at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2060) at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2049) at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:49) at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:740) at org.apache.spark.SparkContext.runJob(SparkContext.scala:2073) at org.apache.spark.SparkContext.runJob(SparkContext.scala:2094) at org.apache.spark.SparkContext.runJob(SparkContext.scala:2113) at org.apache.spark.sql.execution.SparkPlan.executeTake(SparkPlan.scala:365) at org.apache.spark.sql.execution.CollectLimitExec.executeCollect(limit.scala:38) at org.apache.spark.sql.Dataset.org$apache$spark$sql$Dataset$$collectFromPlan(Dataset.scala:3383) at org.apache.spark.sql.Dataset$$anonfun$head$1.apply(Dataset.scala:2544) at org.apache.spark.sql.Dataset$$anonfun$head$1.apply(Dataset.scala:2544) at org.apache.spark.sql.Dataset$$anonfun$53.apply(Dataset.scala:3364) at org.apache.spark.sql.execution.SQLExecution$$anonfun$withNewExecutionId$1.apply(SQLExecution.scala:78) at org.apache.spark.sql.execution.SQLExecution$.withSQLConfPropagated(SQLExecution.scala:125) at org.apache.spark.sql.execution.SQLExecution$.withNewExecutionId(SQLExecution.scala:73) at org.apache.spark.sql.Dataset.withAction(Dataset.scala:3363) at org.apache.spark.sql.Dataset.head(Dataset.scala:2544) at org.apache.spark.sql.Dataset.take(Dataset.scala:2758) at org.apache.spark.sql.Dataset.getRows(Dataset.scala:254) at org.apache.spark.sql.Dataset.showString(Dataset.scala:291) at org.apache.spark.sql.Dataset.show(Dataset.scala:745) at org.apache.spark.sql.Dataset.show(Dataset.scala:704) at org.apache.spark.sql.Dataset.show(Dataset.scala:713) ... 47 elided Caused by: java.io.InvalidClassException: org.apache.commons.lang3.time.FastDateParser; local class incompatible: stream classdesc serialVersionUID = 2, local class serialVersionUID = 3 at java.io.ObjectStreamClass.initNonProxy(ObjectStreamClass.java:699) at java.io.ObjectInputStream.readNonProxyDesc(ObjectInputStream.java:1885) at java.io.ObjectInputStream.readClassDesc(ObjectInputStream.java:1751) at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2042) at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1573) at java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:2287) at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:2211) at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2069) at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1573) at java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:2287) at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:2211) at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2069) at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1573) at java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:2287) at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:2211) at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2069) at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1573) at java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:2287) at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:2211) at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2069) at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1573) at java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:2287) at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:2211) at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2069) at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1573) at java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:2287) at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:2211) at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2069) at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1573) at java.io.ObjectInputStream.readObject(ObjectInputStream.java:431) at scala.collection.immutable.List$SerializationProxy.readObject(List.scala:490) at sun.reflect.GeneratedMethodAccessor4.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at java.io.ObjectStreamClass.invokeReadObject(ObjectStreamClass.java:1170) at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:2178) at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2069) at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1573) at java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:2287) at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:2211) at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2069) at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1573) at java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:2287) at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:2211) at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2069) at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1573) at java.io.ObjectInputStream.readObject(ObjectInputStream.java:431) at scala.collection.immutable.List$SerializationProxy.readObject(List.scala:490) at sun.reflect.GeneratedMethodAccessor4.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at java.io.ObjectStreamClass.invokeReadObject(ObjectStreamClass.java:1170) at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:2178) at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2069) at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1573) at java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:2287) at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:2211) at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2069) at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1573) at java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:2287) at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:2211) at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2069) at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1573) at java.io.ObjectInputStream.readObject(ObjectInputStream.java:431) at scala.collection.immutable.List$SerializationProxy.readObject(List.scala:490) at sun.reflect.GeneratedMethodAccessor4.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at java.io.ObjectStreamClass.invokeReadObject(ObjectStreamClass.java:1170) at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:2178) at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2069) at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1573) at java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:2287) at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:2211) at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2069) at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1573) at java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:2287) at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:2211) at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2069) at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1573) at java.io.ObjectInputStream.readObject(ObjectInputStream.java:431) at org.apache.spark.serializer.JavaDeserializationStream.readObject(JavaSerializer.scala:75) at org.apache.spark.serializer.JavaSerializerInstance.deserialize(JavaSerializer.scala:114) at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:83) at org.apache.spark.scheduler.Task.run(Task.scala:121) at org.apache.spark.executor.Executor$TaskRunner$$anonfun$11.apply(Executor.scala:407) at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:413) ... 3 more
      

       

      I have seen this error before due to Zeppelin using an older version commons.lang3 than the Spark: https://issues.apache.org/jira/browse/ZEPPELIN-1977

       

      Spark 2.4 is using 3.7 in Cloudera but Zeppelin is using 3.4 in branch-0.8:

      /opt/cloudera/parcels/CDH-6.1.0-1.cdh6.1.0.p0.770702/lib/hadoop/client/commons-lang3-3.7.jar

      /opt/zeppelin-0.8.1/zeppelin-interpreter/target/lib/commons-lang3-3.4.jar

       

      I have seen that Spark 2.4 has become supported in Zeppelin 0.8.1 and (0.9.0, not so sure since I saw commons-lang3:3.7 somewhere in the master) so I assume it should be fully compatible. However, as now it is impossible to read any CSV or JSON file (might be more) due to serialization incompatibility.

       

      PS: everything works with spark-shell yarn as a master. Only fails in Zeppelin.

      Many thanks.

       

      The reported issue on Cloudera:

      https://community.cloudera.com/t5/Advanced-Analytics-Apache-Spark/Reading-JSON-file-fails-in-Spark-2-4-0-cdh6-1-0/m-p/84656#M3612

       

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              • Assignee:
                maziyar Maziyar PANAHI
                Reporter:
                maziyar Maziyar PANAHI
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