[SYSTEMDS-768] Test errors with "mvn clean verify"

• Type: Bug
• Status: Closed
• Priority: Critical
• Resolution: Fixed
• Affects Version/s: SystemML 0.11
• Fix Version/s: SystemML 0.12
• Component/s: Test
• Labels: build easyfix
• Environment: MacOS El Capitan
• Assignee: Kevin Bates
• Reporter: Abhinav Maurya
• Created: 21/Jun/16 00:55
• Updated: 02/Mar/17 18:24
• Resolved: 30/Nov/16 18:38

Description

1. While installing required R packages, I get a warning that certain packages don't exist anymore. The error is "Warning: dependencies ‘GenomicRanges’, ‘graph’, ‘Rgraphviz’, ‘corpus.JSS.papers’ are not available". The log is attached as r-dependency-warnings.txt I don't think this led to any issues. However, my next error is also related to an R script execution failure.

2. I ran "mvn clean verify" All tests pass consistently except the 9 tests in CTableMatrixIgnoreZerosTest. The problem is related to R script execution. The error is: "CTableMatrixIgnoreZerosTest.testCTableMatrixIgnoreZerosRewriteDenseSP:70->runCTableTest:169->AutomatedTestBase.runRScript:1010 failed to run script ./src/test/scripts/functions/ternary/CTableRowHist.R exception: java.lang.Exception: ERROR: R has ended irregularly" The detailed error log is attached in systemml-test-errors.txt It would be good to at least output the exact R script invocation that led to a test error.