[SPARK-6024] When a data source table has too many columns, it's schema cannot be stored in metastore. - ASF JIRA

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Type: Bug
Status: Resolved
Priority: Blocker
Resolution: Fixed
Affects Version/s: None
Fix Version/s: 1.3.0
Component/s: SQL
Labels:
None

Target Version/s:

1.3.0

Description

Because we are using table properties of a Hive metastore table to store the schema, when a schema is too wide, we cannot persist it in metastore.

15/02/25 18:13:50 ERROR metastore.RetryingHMSHandler: Retrying HMSHandler after 1000 ms (attempt 1 of 1) with error: javax.jdo.JDODataStoreException: Put request failed : INSERT INTO TABLE_PARAMS (PARAM_VALUE,TBL_ID,PARAM_KEY) VALUES (?,?,?) 
	at org.datanucleus.api.jdo.NucleusJDOHelper.getJDOExceptionForNucleusException(NucleusJDOHelper.java:451)
	at org.datanucleus.api.jdo.JDOPersistenceManager.jdoMakePersistent(JDOPersistenceManager.java:732)
	at org.datanucleus.api.jdo.JDOPersistenceManager.makePersistent(JDOPersistenceManager.java:752)
	at org.apache.hadoop.hive.metastore.ObjectStore.createTable(ObjectStore.java:719)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:606)
	at org.apache.hadoop.hive.metastore.RawStoreProxy.invoke(RawStoreProxy.java:108)
	at com.sun.proxy.$Proxy15.createTable(Unknown Source)
	at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.create_table_core(HiveMetaStore.java:1261)
	at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.create_table_with_environment_context(HiveMetaStore.java:1294)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:606)
	at org.apache.hadoop.hive.metastore.RetryingHMSHandler.invoke(RetryingHMSHandler.java:105)
	at com.sun.proxy.$Proxy16.create_table_with_environment_context(Unknown Source)
	at org.apache.hadoop.hive.metastore.HiveMetaStoreClient.createTable(HiveMetaStoreClient.java:558)
	at org.apache.hadoop.hive.metastore.HiveMetaStoreClient.createTable(HiveMetaStoreClient.java:547)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:606)
	at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.invoke(RetryingMetaStoreClient.java:89)
	at com.sun.proxy.$Proxy17.createTable(Unknown Source)
	at org.apache.hadoop.hive.ql.metadata.Hive.createTable(Hive.java:613)
	at org.apache.spark.sql.hive.HiveMetastoreCatalog.createDataSourceTable(HiveMetastoreCatalog.scala:136)
	at org.apache.spark.sql.hive.execution.CreateMetastoreDataSourceAsSelect.run(commands.scala:243)
	at org.apache.spark.sql.execution.ExecutedCommand.sideEffectResult$lzycompute(commands.scala:55)
	at org.apache.spark.sql.execution.ExecutedCommand.sideEffectResult(commands.scala:55)
	at org.apache.spark.sql.execution.ExecutedCommand.execute(commands.scala:65)
	at org.apache.spark.sql.SQLContext$QueryExecution.toRdd$lzycompute(SQLContext.scala:1092)
	at org.apache.spark.sql.SQLContext$QueryExecution.toRdd(SQLContext.scala:1092)
	at org.apache.spark.sql.DataFrame.saveAsTable(DataFrame.scala:1013)
	at org.apache.spark.sql.DataFrame.saveAsTable(DataFrame.scala:963)
	at org.apache.spark.sql.DataFrame.saveAsTable(DataFrame.scala:929)
	at org.apache.spark.sql.DataFrame.saveAsTable(DataFrame.scala:907)
	at $line39.$read$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:25)
	at $line39.$read$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:30)
	at $line39.$read$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:32)
	at $line39.$read$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:34)
	at $line39.$read$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:36)
	at $line39.$read$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:38)
	at $line39.$read$$iwC$$iwC$$iwC$$iwC.<init>(<console>:40)
	at $line39.$read$$iwC$$iwC$$iwC.<init>(<console>:42)
	at $line39.$read$$iwC$$iwC.<init>(<console>:44)
	at $line39.$read$$iwC.<init>(<console>:46)
	at $line39.$read.<init>(<console>:48)
	at $line39.$read$.<init>(<console>:52)
	at $line39.$read$.<clinit>(<console>)
	at $line39.$eval$.<init>(<console>:7)
	at $line39.$eval$.<clinit>(<console>)
	at $line39.$eval.$print(<console>)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:606)
	at org.apache.spark.repl.SparkIMain$ReadEvalPrint.call(SparkIMain.scala:1065)
	at org.apache.spark.repl.SparkIMain$Request.loadAndRun(SparkIMain.scala:1338)
	at org.apache.spark.repl.SparkIMain.loadAndRunReq$1(SparkIMain.scala:840)
	at org.apache.spark.repl.SparkIMain.interpret(SparkIMain.scala:871)
	at org.apache.spark.repl.SparkIMain.interpret(SparkIMain.scala:819)
	at org.apache.spark.repl.SparkILoop.reallyInterpret$1(SparkILoop.scala:856)
	at org.apache.spark.repl.SparkILoop.interpretStartingWith(SparkILoop.scala:901)
	at org.apache.spark.repl.SparkILoop.command(SparkILoop.scala:813)
	at org.apache.spark.repl.SparkILoop.processLine$1(SparkILoop.scala:656)
	at org.apache.spark.repl.SparkILoop.innerLoop$1(SparkILoop.scala:664)
	at org.apache.spark.repl.SparkILoop.org$apache$spark$repl$SparkILoop$$loop(SparkILoop.scala:669)
	at org.apache.spark.repl.SparkILoop$$anonfun$org$apache$spark$repl$SparkILoop$$process$1.apply$mcZ$sp(SparkILoop.scala:996)
	at org.apache.spark.repl.SparkILoop$$anonfun$org$apache$spark$repl$SparkILoop$$process$1.apply(SparkILoop.scala:944)
	at org.apache.spark.repl.SparkILoop$$anonfun$org$apache$spark$repl$SparkILoop$$process$1.apply(SparkILoop.scala:944)
	at scala.tools.nsc.util.ScalaClassLoader$.savingContextLoader(ScalaClassLoader.scala:135)
	at org.apache.spark.repl.SparkILoop.org$apache$spark$repl$SparkILoop$$process(SparkILoop.scala:944)
	at org.apache.spark.repl.SparkILoop.process(SparkILoop.scala:1058)
	at org.apache.spark.repl.Main$.main(Main.scala:31)
	at org.apache.spark.repl.Main.main(Main.scala)
NestedThrowablesStackTrace:
org.datanucleus.store.rdbms.exceptions.MappedDatastoreException: INSERT INTO TABLE_PARAMS (PARAM_VALUE,TBL_ID,PARAM_KEY) VALUES (?,?,?) 
	at org.datanucleus.store.rdbms.scostore.JoinMapStore.internalPut(JoinMapStore.java:1078)
	at org.datanucleus.store.rdbms.scostore.JoinMapStore.putAll(JoinMapStore.java:220)
	at org.datanucleus.store.rdbms.mapping.java.MapMapping.postInsert(MapMapping.java:137)
	at org.datanucleus.store.rdbms.request.InsertRequest.execute(InsertRequest.java:519)
	at org.datanucleus.store.rdbms.RDBMSPersistenceHandler.insertTable(RDBMSPersistenceHandler.java:167)
	at org.datanucleus.store.rdbms.RDBMSPersistenceHandler.insertObject(RDBMSPersistenceHandler.java:143)
	at org.datanucleus.state.JDOStateManager.internalMakePersistent(JDOStateManager.java:3784)
	at org.datanucleus.state.JDOStateManager.makePersistent(JDOStateManager.java:3760)
	at org.datanucleus.ExecutionContextImpl.persistObjectInternal(ExecutionContextImpl.java:2219)
	at org.datanucleus.ExecutionContextImpl.persistObjectWork(ExecutionContextImpl.java:2065)
	at org.datanucleus.ExecutionContextImpl.persistObject(ExecutionContextImpl.java:1913)
	at org.datanucleus.ExecutionContextThreadedImpl.persistObject(ExecutionContextThreadedImpl.java:217)
	at org.datanucleus.api.jdo.JDOPersistenceManager.jdoMakePersistent(JDOPersistenceManager.java:727)
	at org.datanucleus.api.jdo.JDOPersistenceManager.makePersistent(JDOPersistenceManager.java:752)
	at org.apache.hadoop.hive.metastore.ObjectStore.createTable(ObjectStore.java:719)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:606)
	at org.apache.hadoop.hive.metastore.RawStoreProxy.invoke(RawStoreProxy.java:108)
	at com.sun.proxy.$Proxy15.createTable(Unknown Source)
	at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.create_table_core(HiveMetaStore.java:1261)
	at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.create_table_with_environment_context(HiveMetaStore.java:1294)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:606)
	at org.apache.hadoop.hive.metastore.RetryingHMSHandler.invoke(RetryingHMSHandler.java:105)
	at com.sun.proxy.$Proxy16.create_table_with_environment_context(Unknown Source)
	at org.apache.hadoop.hive.metastore.HiveMetaStoreClient.createTable(HiveMetaStoreClient.java:558)
	at org.apache.hadoop.hive.metastore.HiveMetaStoreClient.createTable(HiveMetaStoreClient.java:547)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:606)
	at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.invoke(RetryingMetaStoreClient.java:89)
	at com.sun.proxy.$Proxy17.createTable(Unknown Source)
	at org.apache.hadoop.hive.ql.metadata.Hive.createTable(Hive.java:613)
	at org.apache.spark.sql.hive.HiveMetastoreCatalog.createDataSourceTable(HiveMetastoreCatalog.scala:136)
	at org.apache.spark.sql.hive.execution.CreateMetastoreDataSourceAsSelect.run(commands.scala:243)
	at org.apache.spark.sql.execution.ExecutedCommand.sideEffectResult$lzycompute(commands.scala:55)
	at org.apache.spark.sql.execution.ExecutedCommand.sideEffectResult(commands.scala:55)
	at org.apache.spark.sql.execution.ExecutedCommand.execute(commands.scala:65)
	at org.apache.spark.sql.SQLContext$QueryExecution.toRdd$lzycompute(SQLContext.scala:1092)
	at org.apache.spark.sql.SQLContext$QueryExecution.toRdd(SQLContext.scala:1092)
	at org.apache.spark.sql.DataFrame.saveAsTable(DataFrame.scala:1013)
	at org.apache.spark.sql.DataFrame.saveAsTable(DataFrame.scala:963)
	at org.apache.spark.sql.DataFrame.saveAsTable(DataFrame.scala:929)
	at org.apache.spark.sql.DataFrame.saveAsTable(DataFrame.scala:907)
	at $line39.$read$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:25)
	at $line39.$read$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:30)
	at $line39.$read$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:32)
	at $line39.$read$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:34)
	at $line39.$read$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:36)
	at $line39.$read$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:38)
	at $line39.$read$$iwC$$iwC$$iwC$$iwC.<init>(<console>:40)
	at $line39.$read$$iwC$$iwC$$iwC.<init>(<console>:42)
	at $line39.$read$$iwC$$iwC.<init>(<console>:44)
	at $line39.$read$$iwC.<init>(<console>:46)
	at $line39.$read.<init>(<console>:48)
	at $line39.$read$.<init>(<console>:52)
	at $line39.$read$.<clinit>(<console>)
	at $line39.$eval$.<init>(<console>:7)
	at $line39.$eval$.<clinit>(<console>)
	at $line39.$eval.$print(<console>)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:606)
	at org.apache.spark.repl.SparkIMain$ReadEvalPrint.call(SparkIMain.scala:1065)
	at org.apache.spark.repl.SparkIMain$Request.loadAndRun(SparkIMain.scala:1338)
	at org.apache.spark.repl.SparkIMain.loadAndRunReq$1(SparkIMain.scala:840)
	at org.apache.spark.repl.SparkIMain.interpret(SparkIMain.scala:871)
	at org.apache.spark.repl.SparkIMain.interpret(SparkIMain.scala:819)
	at org.apache.spark.repl.SparkILoop.reallyInterpret$1(SparkILoop.scala:856)
	at org.apache.spark.repl.SparkILoop.interpretStartingWith(SparkILoop.scala:901)
	at org.apache.spark.repl.SparkILoop.command(SparkILoop.scala:813)
	at org.apache.spark.repl.SparkILoop.processLine$1(SparkILoop.scala:656)
	at org.apache.spark.repl.SparkILoop.innerLoop$1(SparkILoop.scala:664)
	at org.apache.spark.repl.SparkILoop.org$apache$spark$repl$SparkILoop$$loop(SparkILoop.scala:669)
	at org.apache.spark.repl.SparkILoop$$anonfun$org$apache$spark$repl$SparkILoop$$process$1.apply$mcZ$sp(SparkILoop.scala:996)
	at org.apache.spark.repl.SparkILoop$$anonfun$org$apache$spark$repl$SparkILoop$$process$1.apply(SparkILoop.scala:944)
	at org.apache.spark.repl.SparkILoop$$anonfun$org$apache$spark$repl$SparkILoop$$process$1.apply(SparkILoop.scala:944)
	at scala.tools.nsc.util.ScalaClassLoader$.savingContextLoader(ScalaClassLoader.scala:135)
	at org.apache.spark.repl.SparkILoop.org$apache$spark$repl$SparkILoop$$process(SparkILoop.scala:944)
	at org.apache.spark.repl.SparkILoop.process(SparkILoop.scala:1058)
	at org.apache.spark.repl.Main$.main(Main.scala:31)
	at org.apache.spark.repl.Main.main(Main.scala)
Caused by: java.sql.SQLDataException: A truncation error was encountered trying to shrink VARCHAR '{"type":"struct","fields":[{"name":"contributors","type":"st&' to length 4000.
	at org.apache.derby.impl.jdbc.SQLExceptionFactory40.getSQLException(Unknown Source)
	at org.apache.derby.impl.jdbc.Util.generateCsSQLException(Unknown Source)
	at org.apache.derby.impl.jdbc.TransactionResourceImpl.wrapInSQLException(Unknown Source)
	at org.apache.derby.impl.jdbc.TransactionResourceImpl.handleException(Unknown Source)
	at org.apache.derby.impl.jdbc.EmbedConnection.handleException(Unknown Source)
	at org.apache.derby.impl.jdbc.ConnectionChild.handleException(Unknown Source)
	at org.apache.derby.impl.jdbc.EmbedStatement.executeStatement(Unknown Source)
	at org.apache.derby.impl.jdbc.EmbedPreparedStatement.executeStatement(Unknown Source)
	at org.apache.derby.impl.jdbc.EmbedPreparedStatement.executeLargeUpdate(Unknown Source)
	at org.apache.derby.impl.jdbc.EmbedPreparedStatement.executeUpdate(Unknown Source)
	at com.jolbox.bonecp.PreparedStatementHandle.executeUpdate(PreparedStatementHandle.java:205)
	at org.datanucleus.store.rdbms.ParamLoggingPreparedStatement.executeUpdate(ParamLoggingPreparedStatement.java:399)
	at org.datanucleus.store.rdbms.SQLController.executeStatementUpdate(SQLController.java:439)
	at org.datanucleus.store.rdbms.scostore.JoinMapStore.internalPut(JoinMapStore.java:1069)
	... 87 more
Caused by: java.sql.SQLException: A truncation error was encountered trying to shrink VARCHAR '{"type":"struct","fields":[{"name":"contributors","type":"st&' to length 4000.
	at org.apache.derby.impl.jdbc.SQLExceptionFactory.getSQLException(Unknown Source)
	at org.apache.derby.impl.jdbc.SQLExceptionFactory40.wrapArgsForTransportAcrossDRDA(Unknown Source)
	... 101 more
Caused by: ERROR 22001: A truncation error was encountered trying to shrink VARCHAR '{"type":"struct","fields":[{"name":"contributors","type":"st&' to length 4000.
	at org.apache.derby.iapi.error.StandardException.newException(Unknown Source)
	at org.apache.derby.iapi.types.SQLChar.hasNonBlankChars(Unknown Source)
	at org.apache.derby.iapi.types.SQLVarchar.normalize(Unknown Source)
	at org.apache.derby.iapi.types.SQLVarchar.normalize(Unknown Source)
	at org.apache.derby.iapi.types.DataTypeDescriptor.normalize(Unknown Source)
	at org.apache.derby.impl.sql.execute.NormalizeResultSet.normalizeColumn(Unknown Source)
	at org.apache.derby.impl.sql.execute.NormalizeResultSet.normalizeRow(Unknown Source)
	at org.apache.derby.impl.sql.execute.NormalizeResultSet.getNextRowCore(Unknown Source)
	at org.apache.derby.impl.sql.execute.DMLWriteResultSet.getNextRowCore(Unknown Source)
	at org.apache.derby.impl.sql.execute.InsertResultSet.open(Unknown Source)
	at org.apache.derby.impl.sql.GenericPreparedStatement.executeStmt(Unknown Source)
	at org.apache.derby.impl.sql.GenericPreparedStatement.execute(Unknown Source)
	... 95 more

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Issue Links

links to

[Github] Pull Request #4795 (yhuai)

Activity

People

Assignee:: Yin Huai

Reporter:: Yin Huai

Votes:: 0 Vote for this issue

Watchers:: 2 Start watching this issue

Dates

Created:: 26/Feb/15 02:24

Updated:: 27/Feb/15 04:46

Resolved:: 27/Feb/15 04:46