Details
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Bug
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Status: Open
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Major
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Resolution: Unresolved
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3.0.0
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None
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None
Description
Running Spark on Yarn 3.2.1 in federated cluster
ApplicationMaster fails to register with resourcemanager, and throws a InvalidToken exception.
root@yarn-master-0:/hadoop/spark# HADOOP_CONF_DIR=/hadoop/federation/router ./bin/spark-submit \ --class org.apache.spark.examples.SparkPi \ --master yarn \ --deploy-mode cluster \ --driver-memory 4g \ --executor-memory 2g \ --executor-cores 1 \ --queue default \ examples/jars/spark-examples*.jar 10 2020-04-04 16:44:18,144 WARN util.NativeCodeLoader: Unable to load native-hadoop library for your platform... using builtin-java classes where applicable 2020-04-04 16:44:18,345 INFO client.AHSProxy: Connecting to Application History server at /0.0.0.0:10200 2020-04-04 16:44:18,402 INFO yarn.Client: Requesting a new application from cluster with 10 NodeManagers 2020-04-04 16:44:18,753 INFO conf.Configuration: resource-types.xml not found 2020-04-04 16:44:18,754 INFO resource.ResourceUtils: Unable to find 'resource-types.xml'. 2020-04-04 16:44:18,766 INFO yarn.Client: Verifying our application has not requested more than the maximum memory capability of the cluster (7168 MB per container) 2020-04-04 16:44:18,767 INFO yarn.Client: Will allocate AM container, with 4505 MB memory including 409 MB overhead 2020-04-04 16:44:18,767 INFO yarn.Client: Setting up container launch context for our AM 2020-04-04 16:44:18,768 INFO yarn.Client: Setting up the launch environment for our AM container 2020-04-04 16:44:18,776 INFO yarn.Client: Preparing resources for our AM container 2020-04-04 16:44:18,805 WARN yarn.Client: Neither spark.yarn.jars nor spark.yarn.archive is set, falling back to uploading libraries under SPARK_HOME. 2020-04-04 16:44:19,890 INFO yarn.Client: Uploading resource file:/tmp/spark-cfcf1976-612e-4b64-8bf3-5b0c8f1dc6ec/__spark_libs__5444968329971306297.zip -> hdfs://hdfs-master-0.hdfs-service.hdfs:9000/user/root/.sparkStaging/application_1586018216728_0005/__spark_libs__5444968329971306297.zip 2020-04-04 16:44:22,689 INFO yarn.Client: Uploading resource file:/hadoop/spark/examples/jars/spark-examples_2.12-3.0.0-preview2.jar -> hdfs://hdfs-master-0.hdfs-service.hdfs:9000/user/root/.sparkStaging/application_1586018216728_0005/spark-examples_2.12-3.0.0-preview2.jar 2020-04-04 16:44:22,832 INFO yarn.Client: Uploading resource file:/tmp/spark-cfcf1976-612e-4b64-8bf3-5b0c8f1dc6ec/__spark_conf__2558260056925734476.zip -> hdfs://hdfs-master-0.hdfs-service.hdfs:9000/user/root/.sparkStaging/application_1586018216728_0005/__spark_conf__.zip 2020-04-04 16:44:22,886 INFO spark.SecurityManager: Changing view acls to: root 2020-04-04 16:44:22,886 INFO spark.SecurityManager: Changing modify acls to: root 2020-04-04 16:44:22,886 INFO spark.SecurityManager: Changing view acls groups to: 2020-04-04 16:44:22,887 INFO spark.SecurityManager: Changing modify acls groups to: 2020-04-04 16:44:22,887 INFO spark.SecurityManager: SecurityManager: authentication disabled; ui acls disabled; users with view permissions: Set(root); groups with view permissions: Set(); users with modify permissions: Set(root); groups with modify permissions: Set() 2020-04-04 16:44:22,927 INFO yarn.Client: Submitting application application_1586018216728_0005 to ResourceManager 2020-04-04 16:44:22,963 INFO impl.YarnClientImpl: Submitted application application_1586018216728_0005 2020-04-04 16:44:23,967 INFO yarn.Client: Application report for application_1586018216728_0005 (state: ACCEPTED) 2020-04-04 16:44:23,969 INFO yarn.Client: client token: N/A diagnostics: AM container is launched, waiting for AM container to Register with RM ApplicationMaster host: N/A ApplicationMaster RPC port: -1 queue: default start time: 1586018662937 final status: UNDEFINED tracking URL: http://yarn-master-0.yarn-service.yarn-subcluster-a.svc.cluster.local:8088/proxy/application_1586018216728_0005/ user: root 2020-04-04 16:44:24,972 INFO yarn.Client: Application report for application_1586018216728_0005 (state: ACCEPTED) 2020-04-04 16:44:25,974 INFO yarn.Client: Application report for application_1586018216728_0005 (state: ACCEPTED) 2020-04-04 16:44:26,977 INFO yarn.Client: Application report for application_1586018216728_0005 (state: ACCEPTED) 2020-04-04 16:44:27,980 INFO yarn.Client: Application report for application_1586018216728_0005 (state: ACCEPTED) 2020-04-04 16:44:28,983 INFO yarn.Client: Application report for application_1586018216728_0005 (state: ACCEPTED) 2020-04-04 16:44:29,985 INFO yarn.Client: Application report for application_1586018216728_0005 (state: ACCEPTED) 2020-04-04 16:44:30,988 INFO yarn.Client: Application report for application_1586018216728_0005 (state: ACCEPTED) 2020-04-04 16:44:31,991 INFO yarn.Client: Application report for application_1586018216728_0005 (state: ACCEPTED) 2020-04-04 16:44:32,994 INFO yarn.Client: Application report for application_1586018216728_0005 (state: ACCEPTED) 2020-04-04 16:44:33,996 INFO yarn.Client: Application report for application_1586018216728_0005 (state: FAILED) 2020-04-04 16:44:33,997 INFO yarn.Client: client token: N/A diagnostics: Application application_1586018216728_0005 failed 2 times due to AM Container for appattempt_1586018216728_0005_000002 exited with exitCode: 13 Failing this attempt.Diagnostics: [2020-04-04 16:44:33.276]Exception from container-launch. Container id: container_e27933_1586018216728_0005_02_000001 Exit code: 13 [2020-04-04 16:44:33.297]Container exited with a non-zero exit code 13. Error file: prelaunch.err. Last 4096 bytes of prelaunch.err : Last 4096 bytes of stderr : ect.Constructor.newInstance(Constructor.java:423) at org.apache.hadoop.yarn.ipc.RPCUtil.instantiateException(RPCUtil.java:53) at org.apache.hadoop.yarn.ipc.RPCUtil.instantiateIOException(RPCUtil.java:80) at org.apache.hadoop.yarn.ipc.RPCUtil.unwrapAndThrowException(RPCUtil.java:119) at org.apache.hadoop.yarn.api.impl.pb.client.ApplicationMasterProtocolPBClientImpl.registerApplicationMaster(ApplicationMasterProtocolPBClientImpl.java:109) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.apache.hadoop.io.retry.RetryInvocationHandler.invokeMethod(RetryInvocationHandler.java:422) at org.apache.hadoop.io.retry.RetryInvocationHandler$Call.invokeMethod(RetryInvocationHandler.java:165) at org.apache.hadoop.io.retry.RetryInvocationHandler$Call.invoke(RetryInvocationHandler.java:157) at org.apache.hadoop.io.retry.RetryInvocationHandler$Call.invokeOnce(RetryInvocationHandler.java:95) at org.apache.hadoop.io.retry.RetryInvocationHandler.invoke(RetryInvocationHandler.java:359) at com.sun.proxy.$Proxy16.registerApplicationMaster(Unknown Source) at org.apache.hadoop.yarn.client.api.impl.AMRMClientImpl.registerApplicationMaster(AMRMClientImpl.java:246) at org.apache.hadoop.yarn.client.api.impl.AMRMClientImpl.registerApplicationMaster(AMRMClientImpl.java:233) at org.apache.hadoop.yarn.client.api.impl.AMRMClientImpl.registerApplicationMaster(AMRMClientImpl.java:213) at org.apache.spark.deploy.yarn.YarnRMClient.register(YarnRMClient.scala:71) at org.apache.spark.deploy.yarn.ApplicationMaster.registerAM(ApplicationMaster.scala:426) at org.apache.spark.deploy.yarn.ApplicationMaster.runDriver(ApplicationMaster.scala:504) at org.apache.spark.deploy.yarn.ApplicationMaster.run(ApplicationMaster.scala:262) at org.apache.spark.deploy.yarn.ApplicationMaster$$anon$3.run(ApplicationMaster.scala:875) at org.apache.spark.deploy.yarn.ApplicationMaster$$anon$3.run(ApplicationMaster.scala:874) at java.security.AccessController.doPrivileged(Native Method) at javax.security.auth.Subject.doAs(Subject.java:422) at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1730) at org.apache.spark.deploy.yarn.ApplicationMaster$.main(ApplicationMaster.scala:874) at org.apache.spark.deploy.yarn.ApplicationMaster.main(ApplicationMaster.scala) Caused by: org.apache.hadoop.ipc.RemoteException(org.apache.hadoop.security.token.SecretManager$InvalidToken): Invalid AMRMToken from appattempt_1586018216728_0005_000002 at org.apache.hadoop.ipc.Client.getRpcResponse(Client.java:1511) at org.apache.hadoop.ipc.Client.call(Client.java:1457) at org.apache.hadoop.ipc.Client.call(Client.java:1367) at org.apache.hadoop.ipc.ProtobufRpcEngine$Invoker.invoke(ProtobufRpcEngine.java:228) at org.apache.hadoop.ipc.ProtobufRpcEngine$Invoker.invoke(ProtobufRpcEngine.java:116) at com.sun.proxy.$Proxy15.registerApplicationMaster(Unknown Source) at org.apache.hadoop.yarn.api.impl.pb.client.ApplicationMasterProtocolPBClientImpl.registerApplicationMaster(ApplicationMasterProtocolPBClientImpl.java:107) ... 24 more ) 2020-04-04 16:44:32,555 INFO yarn.ApplicationMaster: Deleting staging directory hdfs://hdfs-master-0.hdfs-service.hdfs:9000/user/root/.sparkStaging/application_1586018216728_0005 2020-04-04 16:44:32,926 INFO storage.DiskBlockManager: Shutdown hook called 2020-04-04 16:44:32,930 INFO util.ShutdownHookManager: Shutdown hook called 2020-04-04 16:44:32,930 INFO util.ShutdownHookManager: Deleting directory /opt/hadoop/hadooptmpdata/nm-local-dir/usercache/root/appcache/application_1586018216728_0005/spark-5d3f083f-eb43-49e9-a779-2354e07e9bd7/userFiles-1721c4df-1674-4695-b3aa-02e8c72908c0 2020-04-04 16:44:32,932 INFO util.ShutdownHookManager: Deleting directory /opt/hadoop/hadooptmpdata/nm-local-dir/usercache/root/appcache/application_1586018216728_0005/spark-5d3f083f-eb43-49e9-a779-2354e07e9bd7
Submitting this here and not in Yarn Jira because Hadoop Mapred Jobs run normally in the same cluster.