[SPARK-21999] ConcurrentModificationException - Spark Streaming - ASF JIRA

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Type: Bug
Status: Closed
Priority: Critical
Resolution: Won't Fix
Affects Version/s: 2.1.0
Fix Version/s: None
Component/s: Spark Core
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None

Description

Hi,

I am using Spark Streaming v2.1.0 with Kafka 0.8. I am getting ConcurrentModificationException intermittently. When it occurs, Spark does not honor the specified value of spark.task.maxFailures. So Spark aborts the current batch and fetch the next batch, so it results in lost data. Its exception stack is listed below.

This instance of ConcurrentModificationException is similar to the issue at https://issues.apache.org/jira/browse/SPARK-17463, which was about Serialization of accumulators in heartbeats. However, my Spark stream app does not use accumulators.

The stack trace listed below occurred on the Spark master in Spark streaming driver at the time of data loss.

From the line of code in the first stack trace, can you tell which object Spark was trying to serialize ? What is the root cause for this issue ?

Because this issue results in lost data as described above, could you have this issue fixed ASAP ?

Thanks.

Michael N.,

----------------

Stack trace of Spark Streaming driver
ERROR JobScheduler:91: Error generating jobs for time 1505224930000 ms
org.apache.spark.SparkException: Task not serializable
at org.apache.spark.util.ClosureCleaner$.ensureSerializable(ClosureCleaner.scala:298)
at org.apache.spark.util.ClosureCleaner$.org$apache$spark$util$ClosureCleaner$$clean(ClosureCleaner.scala:288)
at org.apache.spark.util.ClosureCleaner$.clean(ClosureCleaner.scala:108)
at org.apache.spark.SparkContext.clean(SparkContext.scala:2094)
at org.apache.spark.rdd.RDD$$anonfun$mapPartitions$1.apply(RDD.scala:793)
at org.apache.spark.rdd.RDD$$anonfun$mapPartitions$1.apply(RDD.scala:792)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:112)
at org.apache.spark.rdd.RDD.withScope(RDD.scala:362)
at org.apache.spark.rdd.RDD.mapPartitions(RDD.scala:792)
at org.apache.spark.streaming.dstream.MapPartitionedDStream$$anonfun$compute$1.apply(MapPartitionedDStream.scala:37)
at org.apache.spark.streaming.dstream.MapPartitionedDStream$$anonfun$compute$1.apply(MapPartitionedDStream.scala:37)
at scala.Option.map(Option.scala:146)
at org.apache.spark.streaming.dstream.MapPartitionedDStream.compute(MapPartitionedDStream.scala:37)
at org.apache.spark.streaming.dstream.DStream$$anonfun$getOrCompute$1$$anonfun$1$$anonfun$apply$7.apply(DStream.scala:341)
at org.apache.spark.streaming.dstream.DStream$$anonfun$getOrCompute$1$$anonfun$1$$anonfun$apply$7.apply(DStream.scala:341)
at scala.util.DynamicVariable.withValue(DynamicVariable.scala:58)
at org.apache.spark.streaming.dstream.DStream$$anonfun$getOrCompute$1$$anonfun$1.apply(DStream.scala:340)
at org.apache.spark.streaming.dstream.DStream$$anonfun$getOrCompute$1$$anonfun$1.apply(DStream.scala:340)
at org.apache.spark.streaming.dstream.DStream.createRDDWithLocalProperties(DStream.scala:415)
at org.apache.spark.streaming.dstream.DStream$$anonfun$getOrCompute$1.apply(DStream.scala:335)
at org.apache.spark.streaming.dstream.DStream$$anonfun$getOrCompute$1.apply(DStream.scala:333)
at scala.Option.orElse(Option.scala:289)
at org.apache.spark.streaming.dstream.DStream.getOrCompute(DStream.scala:330)
at org.apache.spark.streaming.dstream.TransformedDStream$$anonfun$6.apply(TransformedDStream.scala:42)
at org.apache.spark.streaming.dstream.TransformedDStream$$anonfun$6.apply(TransformedDStream.scala:42)
at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:234)
at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:234)
at scala.collection.immutable.List.foreach(List.scala:381)
at scala.collection.TraversableLike$class.map(TraversableLike.scala:234)
at scala.collection.immutable.List.map(List.scala:285)
at org.apache.spark.streaming.dstream.TransformedDStream.compute(TransformedDStream.scala:42)
at org.apache.spark.streaming.dstream.DStream$$anonfun$getOrCompute$1$$anonfun$1$$anonfun$apply$7.apply(DStream.scala:341)
at org.apache.spark.streaming.dstream.DStream$$anonfun$getOrCompute$1$$anonfun$1$$anonfun$apply$7.apply(DStream.scala:341)
at scala.util.DynamicVariable.withValue(DynamicVariable.scala:58)
at org.apache.spark.streaming.dstream.DStream$$anonfun$getOrCompute$1$$anonfun$1.apply(DStream.scala:340)
at org.apache.spark.streaming.dstream.DStream$$anonfun$getOrCompute$1$$anonfun$1.apply(DStream.scala:340)
at org.apache.spark.streaming.dstream.DStream.createRDDWithLocalProperties(DStream.scala:415)
at org.apache.spark.streaming.dstream.TransformedDStream.createRDDWithLocalProperties(TransformedDStream.scala:65)
at org.apache.spark.streaming.dstream.DStream$$anonfun$getOrCompute$1.apply(DStream.scala:335)
at org.apache.spark.streaming.dstream.DStream$$anonfun$getOrCompute$1.apply(DStream.scala:333)
at scala.Option.orElse(Option.scala:289)
at org.apache.spark.streaming.dstream.DStream.getOrCompute(DStream.scala:330)
at org.apache.spark.streaming.dstream.ForEachDStream.generateJob(ForEachDStream.scala:48)
at org.apache.spark.streaming.DStreamGraph$$anonfun$1.apply(DStreamGraph.scala:117)
at org.apache.spark.streaming.DStreamGraph$$anonfun$1.apply(DStreamGraph.scala:116)
at scala.collection.TraversableLike$$anonfun$flatMap$1.apply(TraversableLike.scala:241)
at scala.collection.TraversableLike$$anonfun$flatMap$1.apply(TraversableLike.scala:241)
at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:48)
at scala.collection.TraversableLike$class.flatMap(TraversableLike.scala:241)
at scala.collection.AbstractTraversable.flatMap(Traversable.scala:104)
at org.apache.spark.streaming.DStreamGraph.generateJobs(DStreamGraph.scala:116)
at org.apache.spark.streaming.scheduler.JobGenerator$$anonfun$3.apply(JobGenerator.scala:249)
at org.apache.spark.streaming.scheduler.JobGenerator$$anonfun$3.apply(JobGenerator.scala:247)
at scala.util.Try$.apply(Try.scala:192)
at org.apache.spark.streaming.scheduler.JobGenerator.generateJobs(JobGenerator.scala:247)
at org.apache.spark.streaming.scheduler.JobGenerator.org$apache$spark$streaming$scheduler$JobGenerator$$processEvent(JobGenerator.scala:183)
at org.apache.spark.streaming.scheduler.JobGenerator$$anon$1.onReceive(JobGenerator.scala:89)
at org.apache.spark.streaming.scheduler.JobGenerator$$anon$1.onReceive(JobGenerator.scala:88)
at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:48)
Caused by: java.util.ConcurrentModificationException
at java.util.ArrayList.writeObject(ArrayList.java:766)
at sun.reflect.GeneratedMethodAccessor21.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at java.io.ObjectStreamClass.invokeWriteObject(ObjectStreamClass.java:1028)
at java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java:1496)
at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1432)
at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1178)
at java.io.ObjectOutputStream.defaultWriteFields(ObjectOutputStream.java:1548)
at java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java:1509)
at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1432)
at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1178)
at java.io.ObjectOutputStream.defaultWriteFields(ObjectOutputStream.java:1548)
at java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java:1509)
at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1432)
at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1178)
at java.io.ObjectOutputStream.defaultWriteFields(ObjectOutputStream.java:1548)
at java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java:1509)
at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1432)
at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1178)
at java.io.ObjectOutputStream.defaultWriteFields(ObjectOutputStream.java:1548)
at java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java:1509)
at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1432)
at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1178)
at java.io.ObjectOutputStream.defaultWriteFields(ObjectOutputStream.java:1548)
at java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java:1509)
at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1432)
at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1178)
at java.io.ObjectOutputStream.writeObject(ObjectOutputStream.java:348)
at org.apache.spark.serializer.JavaSerializationStream.writeObject(JavaSerializer.scala:43)
at org.apache.spark.serializer.JavaSerializerInstance.serialize(JavaSerializer.scala:100)
at org.apache.spark.util.ClosureCleaner$.ensureSerializable(ClosureCleaner.scala:295)
... 60 more
2017-09-12 07:02:10.029 ERROR
org.apache.spark.SparkException: Task not serializable
at org.apache.spark.util.ClosureCleaner$.ensureSerializable(ClosureCleaner.scala:298)
at org.apache.spark.util.ClosureCleaner$.org$apache$spark$util$ClosureCleaner$$clean(ClosureCleaner.scala:288)
at org.apache.spark.util.ClosureCleaner$.clean(ClosureCleaner.scala:108)
at org.apache.spark.SparkContext.clean(SparkContext.scala:2094)
at org.apache.spark.rdd.RDD$$anonfun$mapPartitions$1.apply(RDD.scala:793)
at org.apache.spark.rdd.RDD$$anonfun$mapPartitions$1.apply(RDD.scala:792)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:112)
at org.apache.spark.rdd.RDD.withScope(RDD.scala:362)
at org.apache.spark.rdd.RDD.mapPartitions(RDD.scala:792)
at org.apache.spark.streaming.dstream.MapPartitionedDStream$$anonfun$compute$1.apply(MapPartitionedDStream.scala:37)
at org.apache.spark.streaming.dstream.MapPartitionedDStream$$anonfun$compute$1.apply(MapPartitionedDStream.scala:37)
at scala.Option.map(Option.scala:146)
at org.apache.spark.streaming.dstream.MapPartitionedDStream.compute(MapPartitionedDStream.scala:37)
at org.apache.spark.streaming.dstream.DStream$$anonfun$getOrCompute$1$$anonfun$1$$anonfun$apply$7.apply(DStream.scala:341)
at org.apache.spark.streaming.dstream.DStream$$anonfun$getOrCompute$1$$anonfun$1$$anonfun$apply$7.apply(DStream.scala:341)
at scala.util.DynamicVariable.withValue(DynamicVariable.scala:58)
at org.apache.spark.streaming.dstream.DStream$$anonfun$getOrCompute$1$$anonfun$1.apply(DStream.scala:340)
at org.apache.spark.streaming.dstream.DStream$$anonfun$getOrCompute$1$$anonfun$1.apply(DStream.scala:340)
at org.apache.spark.streaming.dstream.DStream.createRDDWithLocalProperties(DStream.scala:415)
at org.apache.spark.streaming.dstream.DStream$$anonfun$getOrCompute$1.apply(DStream.scala:335)
at org.apache.spark.streaming.dstream.DStream$$anonfun$getOrCompute$1.apply(DStream.scala:333)
at scala.Option.orElse(Option.scala:289)
at org.apache.spark.streaming.dstream.DStream.getOrCompute(DStream.scala:330)
at org.apache.spark.streaming.dstream.TransformedDStream$$anonfun$6.apply(TransformedDStream.scala:42)
at org.apache.spark.streaming.dstream.TransformedDStream$$anonfun$6.apply(TransformedDStream.scala:42)
at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:234)
at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:234)
at scala.collection.immutable.List.foreach(List.scala:381)
at scala.collection.TraversableLike$class.map(TraversableLike.scala:234)
at scala.collection.immutable.List.map(List.scala:285)
at org.apache.spark.streaming.dstream.TransformedDStream.compute(TransformedDStream.scala:42)
at org.apache.spark.streaming.dstream.DStream$$anonfun$getOrCompute$1$$anonfun$1$$anonfun$apply$7.apply(DStream.scala:341)
at org.apache.spark.streaming.dstream.DStream$$anonfun$getOrCompute$1$$anonfun$1$$anonfun$apply$7.apply(DStream.scala:341)
at scala.util.DynamicVariable.withValue(DynamicVariable.scala:58)
at org.apache.spark.streaming.dstream.DStream$$anonfun$getOrCompute$1$$anonfun$1.apply(DStream.scala:340)
at org.apache.spark.streaming.dstream.DStream$$anonfun$getOrCompute$1$$anonfun$1.apply(DStream.scala:340)
at org.apache.spark.streaming.dstream.DStream.createRDDWithLocalProperties(DStream.scala:415)
at org.apache.spark.streaming.dstream.TransformedDStream.createRDDWithLocalProperties(TransformedDStream.scala:65)
at org.apache.spark.streaming.dstream.DStream$$anonfun$getOrCompute$1.apply(DStream.scala:335)
at org.apache.spark.streaming.dstream.DStream$$anonfun$getOrCompute$1.apply(DStream.scala:333)
at scala.Option.orElse(Option.scala:289)
at org.apache.spark.streaming.dstream.DStream.getOrCompute(DStream.scala:330)
at org.apache.spark.streaming.dstream.ForEachDStream.generateJob(ForEachDStream.scala:48)
at org.apache.spark.streaming.DStreamGraph$$anonfun$1.apply(DStreamGraph.scala:117)
at org.apache.spark.streaming.DStreamGraph$$anonfun$1.apply(DStreamGraph.scala:116)
at scala.collection.TraversableLike$$anonfun$flatMap$1.apply(TraversableLike.scala:241)
at scala.collection.TraversableLike$$anonfun$flatMap$1.apply(TraversableLike.scala:241)
at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:48)
at scala.collection.TraversableLike$class.flatMap(TraversableLike.scala:241)
at scala.collection.AbstractTraversable.flatMap(Traversable.scala:104)
at org.apache.spark.streaming.DStreamGraph.generateJobs(DStreamGraph.scala:116)
at org.apache.spark.streaming.scheduler.JobGenerator$$anonfun$3.apply(JobGenerator.scala:249)
at org.apache.spark.streaming.scheduler.JobGenerator$$anonfun$3.apply(JobGenerator.scala:247)
at scala.util.Try$.apply(Try.scala:192)
at org.apache.spark.streaming.scheduler.JobGenerator.generateJobs(JobGenerator.scala:247)
at org.apache.spark.streaming.scheduler.JobGenerator.org$apache$spark$streaming$scheduler$JobGenerator$$processEvent(JobGenerator.scala:183)
at org.apache.spark.streaming.scheduler.JobGenerator$$anon$1.onReceive(JobGenerator.scala:89)
at org.apache.spark.streaming.scheduler.JobGenerator$$anon$1.onReceive(JobGenerator.scala:88)
at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:48)
Caused by: java.util.ConcurrentModificationException
at java.util.ArrayList.writeObject(ArrayList.java:766)
at sun.reflect.GeneratedMethodAccessor21.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at java.io.ObjectStreamClass.invokeWriteObject(ObjectStreamClass.java:1028)
at java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java:1496)
at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1432)
at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1178)
at java.io.ObjectOutputStream.defaultWriteFields(ObjectOutputStream.java:1548)
at java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java:1509)
at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1432)
at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1178)
at java.io.ObjectOutputStream.defaultWriteFields(ObjectOutputStream.java:1548)
at java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java:1509)
at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1432)
at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1178)
at java.io.ObjectOutputStream.defaultWriteFields(ObjectOutputStream.java:1548)
at java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java:1509)
at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1432)
at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1178)
at java.io.ObjectOutputStream.defaultWriteFields(ObjectOutputStream.java:1548)
at java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java:1509)
at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1432)
at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1178)
at java.io.ObjectOutputStream.defaultWriteFields(ObjectOutputStream.java:1548)
at java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java:1509)
at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1432)
at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1178)
at java.io.ObjectOutputStream.writeObject(ObjectOutputStream.java:348)
at org.apache.spark.serializer.JavaSerializationStream.writeObject(JavaSerializer.scala:43)
at org.apache.spark.serializer.JavaSerializerInstance.serialize(JavaSerializer.scala:100)
at org.apache.spark.util.ClosureCleaner$.ensureSerializable(ClosureCleaner.scala:295)
... 60 more

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is duplicated by

SPARK-22163 Design Issue of Spark Streaming that Causes Random Run-time Exception

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Assignee:: Unassigned

Reporter:: Michael N (Inactive)

Votes:: 0 Vote for this issue

Watchers:: 6 Start watching this issue

Dates

Created:: 13/Sep/17 23:05

Updated:: 09/Oct/17 06:58

Resolved:: 06/Oct/17 09:15