Hadoop Map/Reduce
  1. Hadoop Map/Reduce
  2. MAPREDUCE-3124

mapper failed with failed to load native libs

    Details

    • Type: Bug Bug
    • Status: Closed
    • Priority: Blocker Blocker
    • Resolution: Fixed
    • Affects Version/s: 0.23.0, 2.0.0-alpha
    • Fix Version/s: 0.23.0
    • Component/s: mrv2
    • Labels:
      None

      Description

      hadoop jar hadoop-mapreduce-examples-*.jar sort -Dmapreduce.job.acl-view
      -job=* -Dmapreduce.map.output.compress=true
      -Dmapreduce.map.output.compress.codec=org.apache.hadoop.io.compress.GzipCodec
      -Dmapreduce.output.fileoutputformat.compress=true -Dmapreduce.output.fileoutputformat.compression.type=NONE -Dmap
      reduce.output.fileoutputformat.compression.codec=org.apache.hadoop.io.compress.GzipCodec -outKey
      org.apache.hadoop.io.Text -outValue org.apache.hadoop.io.Text Compression/textinput Compression/textoutput-1317315994

      This will fail with native libs not found error unless -Dmapred.child.java.opts='-Djava.library.path=$

      {HADOOP_COMMON_HOME}

      /lib/native/Linux-i386-32' is added.

      The error in container log:

      2011-09-29 17:06:56,787 DEBUG org.apache.hadoop.util.NativeCodeLoader: Trying to load the custom-built native-hadoop
      library...2011-09-29 17:06:56,787 DEBUG org.apache.hadoop.util.NativeCodeLoader: Failed to load native-hadoop with
      error: java.lang.UnsatisfiedLinkError: no hadoop in java.library.path2011-09-29 17:06:56,787 DEBUG
      org.apache.hadoop.util.NativeCodeLoader:
      java.library.path=/share/gridjdk-1.6.0_21/jre/lib/i386/server:/share/gridjdk-1.6.0_21/jre/lib/i386:/share/gridjdk-1.6.0_21/jre/../lib/i386:/tmp/mapred-local/usercache/hadoopqa/appcache/application_1317314754104_0012/container_1317314754104_0012_01_000002:/current/lib:/usr/java/packages/lib/i386:/lib:/usr/lib2011-09-29
      17:06:56,787 WARN org.apache.hadoop.util.NativeCodeLoader: Unable to load native-hadoop library for your platform...
      using builtin-java classes where applicable

      Also note that the error that shows up at the application master for this is terrible:

      Container killed by the ApplicationMaster. Container killed on request. Exit code is 137 Too Many fetch failures.Failing the attempt

      1. MAPREDUCE-3124.patch
        4 kB
        John George
      2. MAPREDUCE-3124.patch
        0.8 kB
        John George
      3. MAPREDUCE-3124.patch
        1 kB
        John George

        Activity

        Hide
        John George added a comment -

        Uploading a patch to check if the fix is in the right direction...

        Show
        John George added a comment - Uploading a patch to check if the fix is in the right direction...
        Hide
        Hadoop QA added a comment -

        -1 overall. Here are the results of testing the latest attachment
        http://issues.apache.org/jira/secure/attachment/12498840/MAPREDUCE-3124.patch
        against trunk revision .

        +1 @author. The patch does not contain any @author tags.

        -1 tests included. The patch doesn't appear to include any new or modified tests.
        Please justify why no new tests are needed for this patch.
        Also please list what manual steps were performed to verify this patch.

        +1 javadoc. The javadoc tool did not generate any warning messages.

        +1 javac. The applied patch does not increase the total number of javac compiler warnings.

        +1 findbugs. The patch does not introduce any new Findbugs (version 1.3.9) warnings.

        +1 release audit. The applied patch does not increase the total number of release audit warnings.

        +1 core tests. The patch passed unit tests in .

        +1 contrib tests. The patch passed contrib unit tests.

        Test results: https://builds.apache.org/job/PreCommit-MAPREDUCE-Build/1000//testReport/
        Console output: https://builds.apache.org/job/PreCommit-MAPREDUCE-Build/1000//console

        This message is automatically generated.

        Show
        Hadoop QA added a comment - -1 overall. Here are the results of testing the latest attachment http://issues.apache.org/jira/secure/attachment/12498840/MAPREDUCE-3124.patch against trunk revision . +1 @author. The patch does not contain any @author tags. -1 tests included. The patch doesn't appear to include any new or modified tests. Please justify why no new tests are needed for this patch. Also please list what manual steps were performed to verify this patch. +1 javadoc. The javadoc tool did not generate any warning messages. +1 javac. The applied patch does not increase the total number of javac compiler warnings. +1 findbugs. The patch does not introduce any new Findbugs (version 1.3.9) warnings. +1 release audit. The applied patch does not increase the total number of release audit warnings. +1 core tests. The patch passed unit tests in . +1 contrib tests. The patch passed contrib unit tests. Test results: https://builds.apache.org/job/PreCommit-MAPREDUCE-Build/1000//testReport/ Console output: https://builds.apache.org/job/PreCommit-MAPREDUCE-Build/1000//console This message is automatically generated.
        Hide
        Vinod Kumar Vavilapalli added a comment -

        Hard coding "Linux-i386-32" won't fly. I guess you can use the PlatformName class in Hadoop common utils package, but please test and verify. Thanks.

        Show
        Vinod Kumar Vavilapalli added a comment - Hard coding "Linux-i386-32" won't fly. I guess you can use the PlatformName class in Hadoop common utils package, but please test and verify. Thanks.
        Hide
        John George added a comment -

        Thanks Vinod. Attaching another patch using getPlatform().

        Show
        John George added a comment - Thanks Vinod. Attaching another patch using getPlatform().
        Hide
        Hadoop QA added a comment -

        -1 overall. Here are the results of testing the latest attachment
        http://issues.apache.org/jira/secure/attachment/12498887/MAPREDUCE-3124.patch
        against trunk revision .

        +1 @author. The patch does not contain any @author tags.

        -1 tests included. The patch doesn't appear to include any new or modified tests.
        Please justify why no new tests are needed for this patch.
        Also please list what manual steps were performed to verify this patch.

        +1 javadoc. The javadoc tool did not generate any warning messages.

        +1 javac. The applied patch does not increase the total number of javac compiler warnings.

        +1 findbugs. The patch does not introduce any new Findbugs (version 1.3.9) warnings.

        +1 release audit. The applied patch does not increase the total number of release audit warnings.

        +1 core tests. The patch passed unit tests in .

        +1 contrib tests. The patch passed contrib unit tests.

        Test results: https://builds.apache.org/job/PreCommit-MAPREDUCE-Build/1005//testReport/
        Console output: https://builds.apache.org/job/PreCommit-MAPREDUCE-Build/1005//console

        This message is automatically generated.

        Show
        Hadoop QA added a comment - -1 overall. Here are the results of testing the latest attachment http://issues.apache.org/jira/secure/attachment/12498887/MAPREDUCE-3124.patch against trunk revision . +1 @author. The patch does not contain any @author tags. -1 tests included. The patch doesn't appear to include any new or modified tests. Please justify why no new tests are needed for this patch. Also please list what manual steps were performed to verify this patch. +1 javadoc. The javadoc tool did not generate any warning messages. +1 javac. The applied patch does not increase the total number of javac compiler warnings. +1 findbugs. The patch does not introduce any new Findbugs (version 1.3.9) warnings. +1 release audit. The applied patch does not increase the total number of release audit warnings. +1 core tests. The patch passed unit tests in . +1 contrib tests. The patch passed contrib unit tests. Test results: https://builds.apache.org/job/PreCommit-MAPREDUCE-Build/1005//testReport/ Console output: https://builds.apache.org/job/PreCommit-MAPREDUCE-Build/1005//console This message is automatically generated.
        Hide
        Arun C Murthy added a comment -

        I just committed this trivial change. Thanks John!

        Show
        Arun C Murthy added a comment - I just committed this trivial change. Thanks John!
        Hide
        Hudson added a comment -

        Integrated in Hadoop-Common-trunk-Commit #1080 (See https://builds.apache.org/job/Hadoop-Common-trunk-Commit/1080/)
        MAPREDUCE-3124. Fixed location of native libs i.e. libhadoop.so for containers. Contributed by John George.

        acmurthy : http://svn.apache.org/viewcvs.cgi/?root=Apache-SVN&view=rev&rev=1183188
        Files :

        • /hadoop/common/trunk/hadoop-mapreduce-project/CHANGES.txt
        • /hadoop/common/trunk/hadoop-mapreduce-project/hadoop-mapreduce-client/hadoop-mapreduce-client-core/src/main/java/org/apache/hadoop/mapreduce/MRJobConfig.java
        Show
        Hudson added a comment - Integrated in Hadoop-Common-trunk-Commit #1080 (See https://builds.apache.org/job/Hadoop-Common-trunk-Commit/1080/ ) MAPREDUCE-3124 . Fixed location of native libs i.e. libhadoop.so for containers. Contributed by John George. acmurthy : http://svn.apache.org/viewcvs.cgi/?root=Apache-SVN&view=rev&rev=1183188 Files : /hadoop/common/trunk/hadoop-mapreduce-project/CHANGES.txt /hadoop/common/trunk/hadoop-mapreduce-project/hadoop-mapreduce-client/hadoop-mapreduce-client-core/src/main/java/org/apache/hadoop/mapreduce/MRJobConfig.java
        Hide
        Hudson added a comment -

        Integrated in Hadoop-Hdfs-trunk-Commit #1158 (See https://builds.apache.org/job/Hadoop-Hdfs-trunk-Commit/1158/)
        MAPREDUCE-3124. Fixed location of native libs i.e. libhadoop.so for containers. Contributed by John George.

        acmurthy : http://svn.apache.org/viewcvs.cgi/?root=Apache-SVN&view=rev&rev=1183188
        Files :

        • /hadoop/common/trunk/hadoop-mapreduce-project/CHANGES.txt
        • /hadoop/common/trunk/hadoop-mapreduce-project/hadoop-mapreduce-client/hadoop-mapreduce-client-core/src/main/java/org/apache/hadoop/mapreduce/MRJobConfig.java
        Show
        Hudson added a comment - Integrated in Hadoop-Hdfs-trunk-Commit #1158 (See https://builds.apache.org/job/Hadoop-Hdfs-trunk-Commit/1158/ ) MAPREDUCE-3124 . Fixed location of native libs i.e. libhadoop.so for containers. Contributed by John George. acmurthy : http://svn.apache.org/viewcvs.cgi/?root=Apache-SVN&view=rev&rev=1183188 Files : /hadoop/common/trunk/hadoop-mapreduce-project/CHANGES.txt /hadoop/common/trunk/hadoop-mapreduce-project/hadoop-mapreduce-client/hadoop-mapreduce-client-core/src/main/java/org/apache/hadoop/mapreduce/MRJobConfig.java
        Hide
        Hudson added a comment -

        Integrated in Hadoop-Mapreduce-trunk-Commit #1099 (See https://builds.apache.org/job/Hadoop-Mapreduce-trunk-Commit/1099/)
        MAPREDUCE-3124. Fixed location of native libs i.e. libhadoop.so for containers. Contributed by John George.

        acmurthy : http://svn.apache.org/viewcvs.cgi/?root=Apache-SVN&view=rev&rev=1183188
        Files :

        • /hadoop/common/trunk/hadoop-mapreduce-project/CHANGES.txt
        • /hadoop/common/trunk/hadoop-mapreduce-project/hadoop-mapreduce-client/hadoop-mapreduce-client-core/src/main/java/org/apache/hadoop/mapreduce/MRJobConfig.java
        Show
        Hudson added a comment - Integrated in Hadoop-Mapreduce-trunk-Commit #1099 (See https://builds.apache.org/job/Hadoop-Mapreduce-trunk-Commit/1099/ ) MAPREDUCE-3124 . Fixed location of native libs i.e. libhadoop.so for containers. Contributed by John George. acmurthy : http://svn.apache.org/viewcvs.cgi/?root=Apache-SVN&view=rev&rev=1183188 Files : /hadoop/common/trunk/hadoop-mapreduce-project/CHANGES.txt /hadoop/common/trunk/hadoop-mapreduce-project/hadoop-mapreduce-client/hadoop-mapreduce-client-core/src/main/java/org/apache/hadoop/mapreduce/MRJobConfig.java
        Hide
        Hudson added a comment -

        Integrated in Hadoop-Hdfs-0.23-Build #39 (See https://builds.apache.org/job/Hadoop-Hdfs-0.23-Build/39/)
        Merge -c 1183188 from trunk to branch-0.23 to fix MAPREDUCE-3124.

        acmurthy : http://svn.apache.org/viewcvs.cgi/?root=Apache-SVN&view=rev&rev=1183189
        Files :

        • /hadoop/common/branches/branch-0.23/hadoop-mapreduce-project/CHANGES.txt
        • /hadoop/common/branches/branch-0.23/hadoop-mapreduce-project/hadoop-mapreduce-client/hadoop-mapreduce-client-core/src/main/java/org/apache/hadoop/mapreduce/MRJobConfig.java
        Show
        Hudson added a comment - Integrated in Hadoop-Hdfs-0.23-Build #39 (See https://builds.apache.org/job/Hadoop-Hdfs-0.23-Build/39/ ) Merge -c 1183188 from trunk to branch-0.23 to fix MAPREDUCE-3124 . acmurthy : http://svn.apache.org/viewcvs.cgi/?root=Apache-SVN&view=rev&rev=1183189 Files : /hadoop/common/branches/branch-0.23/hadoop-mapreduce-project/CHANGES.txt /hadoop/common/branches/branch-0.23/hadoop-mapreduce-project/hadoop-mapreduce-client/hadoop-mapreduce-client-core/src/main/java/org/apache/hadoop/mapreduce/MRJobConfig.java
        Hide
        Hudson added a comment -

        Integrated in Hadoop-Hdfs-trunk #830 (See https://builds.apache.org/job/Hadoop-Hdfs-trunk/830/)
        MAPREDUCE-3124. Fixed location of native libs i.e. libhadoop.so for containers. Contributed by John George.

        acmurthy : http://svn.apache.org/viewcvs.cgi/?root=Apache-SVN&view=rev&rev=1183188
        Files :

        • /hadoop/common/trunk/hadoop-mapreduce-project/CHANGES.txt
        • /hadoop/common/trunk/hadoop-mapreduce-project/hadoop-mapreduce-client/hadoop-mapreduce-client-core/src/main/java/org/apache/hadoop/mapreduce/MRJobConfig.java
        Show
        Hudson added a comment - Integrated in Hadoop-Hdfs-trunk #830 (See https://builds.apache.org/job/Hadoop-Hdfs-trunk/830/ ) MAPREDUCE-3124 . Fixed location of native libs i.e. libhadoop.so for containers. Contributed by John George. acmurthy : http://svn.apache.org/viewcvs.cgi/?root=Apache-SVN&view=rev&rev=1183188 Files : /hadoop/common/trunk/hadoop-mapreduce-project/CHANGES.txt /hadoop/common/trunk/hadoop-mapreduce-project/hadoop-mapreduce-client/hadoop-mapreduce-client-core/src/main/java/org/apache/hadoop/mapreduce/MRJobConfig.java
        Hide
        Hudson added a comment -

        Integrated in Hadoop-Mapreduce-trunk #860 (See https://builds.apache.org/job/Hadoop-Mapreduce-trunk/860/)
        MAPREDUCE-3124. Fixed location of native libs i.e. libhadoop.so for containers. Contributed by John George.

        acmurthy : http://svn.apache.org/viewcvs.cgi/?root=Apache-SVN&view=rev&rev=1183188
        Files :

        • /hadoop/common/trunk/hadoop-mapreduce-project/CHANGES.txt
        • /hadoop/common/trunk/hadoop-mapreduce-project/hadoop-mapreduce-client/hadoop-mapreduce-client-core/src/main/java/org/apache/hadoop/mapreduce/MRJobConfig.java
        Show
        Hudson added a comment - Integrated in Hadoop-Mapreduce-trunk #860 (See https://builds.apache.org/job/Hadoop-Mapreduce-trunk/860/ ) MAPREDUCE-3124 . Fixed location of native libs i.e. libhadoop.so for containers. Contributed by John George. acmurthy : http://svn.apache.org/viewcvs.cgi/?root=Apache-SVN&view=rev&rev=1183188 Files : /hadoop/common/trunk/hadoop-mapreduce-project/CHANGES.txt /hadoop/common/trunk/hadoop-mapreduce-project/hadoop-mapreduce-client/hadoop-mapreduce-client-core/src/main/java/org/apache/hadoop/mapreduce/MRJobConfig.java
        Hide
        Hudson added a comment -

        Integrated in Hadoop-Mapreduce-0.23-Build #51 (See https://builds.apache.org/job/Hadoop-Mapreduce-0.23-Build/51/)
        Merge -c 1183188 from trunk to branch-0.23 to fix MAPREDUCE-3124.

        acmurthy : http://svn.apache.org/viewcvs.cgi/?root=Apache-SVN&view=rev&rev=1183189
        Files :

        • /hadoop/common/branches/branch-0.23/hadoop-mapreduce-project/CHANGES.txt
        • /hadoop/common/branches/branch-0.23/hadoop-mapreduce-project/hadoop-mapreduce-client/hadoop-mapreduce-client-core/src/main/java/org/apache/hadoop/mapreduce/MRJobConfig.java
        Show
        Hudson added a comment - Integrated in Hadoop-Mapreduce-0.23-Build #51 (See https://builds.apache.org/job/Hadoop-Mapreduce-0.23-Build/51/ ) Merge -c 1183188 from trunk to branch-0.23 to fix MAPREDUCE-3124 . acmurthy : http://svn.apache.org/viewcvs.cgi/?root=Apache-SVN&view=rev&rev=1183189 Files : /hadoop/common/branches/branch-0.23/hadoop-mapreduce-project/CHANGES.txt /hadoop/common/branches/branch-0.23/hadoop-mapreduce-project/hadoop-mapreduce-client/hadoop-mapreduce-client-core/src/main/java/org/apache/hadoop/mapreduce/MRJobConfig.java

          People

          • Assignee:
            John George
            Reporter:
            Thomas Graves
          • Votes:
            0 Vote for this issue
            Watchers:
            2 Start watching this issue

            Dates

            • Created:
              Updated:
              Resolved:

              Development