[KYLIN-3537] Use Spark to build Cube on Yarn faild at Setp8 on HDP3.0

• Type: Bug
• Status: Closed
• Priority: Major
• Resolution: Fixed
• Fix Version/s: v2.6.1
• Environment: HDP3.0
• Assignee: Alexander
• Reporter: Lijun Cao
• Created: 05/Sep/18 03:49
• Updated: 11/Feb/20 02:25
• Resolved: 22/Feb/19 06:51

Description

The log on Yarn:
18/09/05 03:34:00 INFO scheduler.DAGScheduler: Job 0 failed: saveAsNewAPIHadoopDataset at SparkCubeHFile.java:227, took 13.734642 s
18/09/05 03:34:00 ERROR yarn.ApplicationMaster: User class threw exception: java.lang.RuntimeException: error execute org.apache.kylin.storage.hbase.steps.SparkCubeHFile
java.lang.RuntimeException: error execute org.apache.kylin.storage.hbase.steps.SparkCubeHFile
at org.apache.kylin.common.util.AbstractApplication.execute(AbstractApplication.java:42)
at org.apache.kylin.common.util.SparkEntry.main(SparkEntry.java:44)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.spark.deploy.yarn.ApplicationMaster$$anon$2.run(ApplicationMaster.scala:636)
Caused by: org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in stage 1.0 failed 4 times, most recent failure: Lost task 0.3 in stage 1.0 (TID 14, ignite02.com, executor 2): java.lang.NoClassDefFoundError: org/apache/hadoop/hbase/io/hfile/HFileWriterImpl
at org.apache.hadoop.hbase.mapreduce.HFileOutputFormat2.createRecordWriter(HFileOutputFormat2.java:209)
at org.apache.hadoop.hbase.mapreduce.HFileOutputFormat2.getRecordWriter(HFileOutputFormat2.java:181)
at org.apache.spark.rdd.PairRDDFunctions$$anonfun$saveAsNewAPIHadoopDataset$1$$anonfun$12.apply(PairRDDFunctions.scala:1119)
at org.apache.spark.rdd.PairRDDFunctions$$anonfun$saveAsNewAPIHadoopDataset$1$$anonfun$12.apply(PairRDDFunctions.scala:1102)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87)
at org.apache.spark.scheduler.Task.run(Task.scala:99)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:325)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)

Driver stacktrace:
at org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1435)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1423)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1422)
at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:48)
at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1422)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:802)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:802)
at scala.Option.foreach(Option.scala:257)
at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:802)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:1650)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1605)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1594)
at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:48)
at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:628)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:1928)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:1941)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:1961)
at org.apache.spark.rdd.PairRDDFunctions$$anonfun$saveAsNewAPIHadoopDataset$1.apply$mcV$sp(PairRDDFunctions.scala:1158)
at org.apache.spark.rdd.PairRDDFunctions$$anonfun$saveAsNewAPIHadoopDataset$1.apply(PairRDDFunctions.scala:1085)
at org.apache.spark.rdd.PairRDDFunctions$$anonfun$saveAsNewAPIHadoopDataset$1.apply(PairRDDFunctions.scala:1085)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:112)
at org.apache.spark.rdd.RDD.withScope(RDD.scala:362)
at org.apache.spark.rdd.PairRDDFunctions.saveAsNewAPIHadoopDataset(PairRDDFunctions.scala:1085)
at org.apache.spark.api.java.JavaPairRDD.saveAsNewAPIHadoopDataset(JavaPairRDD.scala:831)
at org.apache.kylin.storage.hbase.steps.SparkCubeHFile.execute(SparkCubeHFile.java:227)
at org.apache.kylin.common.util.AbstractApplication.execute(AbstractApplication.java:37)
... 6 more
Caused by: java.lang.NoClassDefFoundError: org/apache/hadoop/hbase/io/hfile/HFileWriterImpl
at org.apache.hadoop.hbase.mapreduce.HFileOutputFormat2.createRecordWriter(HFileOutputFormat2.java:209)
at org.apache.hadoop.hbase.mapreduce.HFileOutputFormat2.getRecordWriter(HFileOutputFormat2.java:181)
at org.apache.spark.rdd.PairRDDFunctions$$anonfun$saveAsNewAPIHadoopDataset$1$$anonfun$12.apply(PairRDDFunctions.scala:1119)
at org.apache.spark.rdd.PairRDDFunctions$$anonfun$saveAsNewAPIHadoopDataset$1$$anonfun$12.apply(PairRDDFunctions.scala:1102)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87)
at org.apache.spark.scheduler.Task.run(Task.scala:99)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:325)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)

The Spark submission command is:
export HADOOP_CONF_DIR=/usr/hdp/3.0.0.0-1634/hadoop/conf && /root/apache-kylin-2.5.0-SNAPSHOT-bin/spark/bin/spark-submit
--class org.apache.kylin.common.util.SparkEntry
--conf spark.executor.instances=40
--conf spark.yarn.queue=default
--conf spark.yarn.am.extraJavaOptions=-Dhdp.version=current
--conf spark.history.fs.logDirectory=hdfs:///kylin/spark-history
--conf spark.driver.extraJavaOptions=-Dhdp.version=current
--conf spark.master=yarn
--conf spark.executor.extraJavaOptions=-Dhdp.version=current
--conf spark.hadoop.yarn.timeline-service.enabled=false
--conf spark.executor.memory=4G
--conf spark.eventLog.enabled=true
--conf spark.eventLog.dir=hdfs:///kylin/spark-history
--conf spark.yarn.executor.memoryOverhead=1024
--conf spark.driver.memory=2G
--conf spark.submit.deployMode=cluster
--conf spark.shuffle.service.enabled=true
--jars /usr/hdp/3.0.0.0-1634/hbase/lib/hbase-common-2.0.0.3.0.0.0-1634.jar,/usr/hdp/3.0.0.0-1634/hbase/lib/hbase-mapreduce-2.0.0.3.0.0.0-1634.jar,/usr/hdp/3.0.0.0-1634/hbase/lib/hbase-client-2.0.0.3.0.0.0-1634.jar,/usr/hdp/3.0.0.0-1634/hbase/lib/hbase-protocol-2.0.0.3.0.0.0-1634.jar,/usr/hdp/3.0.0.0-1634/hbase/lib/hbase-hadoop-compat-2.0.0.3.0.0.0-1634.jar,/usr/hdp/3.0.0.0-1634/hbase/lib/htrace-core-3.2.0-incubating.jar, /root/apache-kylin-2.5.0-SNAPSHOT-bin/lib/kylin-job-2.5.0-SNAPSHOT.jar
-className org.apache.kylin.storage.hbase.steps.SparkCubeHFile
-output hdfs://ignite01.com:8020/kylin/kylin_metadata/kylin-2fd7b157-a6af-72fa-5a25-350e92056b20/kylin_sales_cube_clone_spark/hfile
-partitions hdfs://ignite01.com:8020/kylin/kylin_metadata/kylin-2fd7b157-a6af-72fa-5a25-350e92056b20/kylin_sales_cube_clone_spark/rowkey_stats/part-r-00000_hfile
-input hdfs://ignite01.com:8020/kylin/kylin_metadata/kylin-2fd7b157-a6af-72fa-5a25-350e92056b20/kylin_sales_cube_clone_spark/cuboid/
-segmentId 8588caa3-df7f-5176-aeda-2ef6642b9698
-metaUrl kylin_metadata@hdfs,path=hdfs://ignite01.com:8020/kylin/kylin_metadata/kylin-2fd7b157-a6af-72fa-5a25-350e92056b20/kylin_sales_cube_clone_spark/metadata
-cubename kylin_sales_cube_clone_spark -hbaseConfPath hdfs://ignite01.com:8020/kylin/kylin_metadata/kylin-2fd7b157-a6af-72fa-5a25-350e92056b20/hbase-conf.xml

Issue Links

• links to: GitHub Pull Request #474