[IMPALA-9733] catalog oom with partition table x(91partitions,200k+files per partition) query like 'describe default.x'

• Type: Bug
• Status: Open
• Priority: Major
• Resolution: Unresolved
• Affects Version/s: Impala 3.2.0
• Component/s: Catalog
• Environment: jdk version: openjdk1.8.0_172 ; os: centos 7.6.1810
• Epic Color: ghx-label-14
• Assignee: Unassigned
• Reporter: h.s
• Created: 07/May/20 14:51
• Updated: 22/Apr/21 09:14

Description

a table default.test (5 column, 91 partitions, about 256k files per partitions, 3.2k per file, totally 23340537 files)

when query 'describe default.test' catalog log throw oom like

I0507 21:03:10.629343 4618 HdfsTable.java:1235] Fetching partition metadata from the Metastore: default.test
I0507 21:03:10.811630 4618 HdfsTable.java:1239] Fetched partition metadata from the Metastore: default.test
I0507 21:03:11.136696 4618 HdfsTable.java:862] Loading file and block metadata for 91 paths for table default.test using a thread pool of size 50
I0507 21:05:03.368173 4618 HdfsTable.java:903] Loaded file and block metadata for default.test
I0507 21:05:03.391232 4618 TableLoader.java:97] Loaded metadata for: default.test
E0507 21:05:16.206063 51284 catalog-server.cc:377] OutOfMemoryError: null
E0507 21:05:28.912606 51284 catalog-server.cc:377] OutOfMemoryError: null

i do debug catalog use idea trace the oom stack like

java.io.ByteArrayOutputStream.hugeCapacity(ByteArrayOutputStream.java:123)
java.io.ByteArrayOutputStream.grow(ByteArrayOutputStream.java:117)
java.io.ByteArrayOutputStream.ensureCapacity(ByteArrayOutputStream.java:93)
java.io.ByteArrayOutputStream.write(ByteArrayOutputStream.java:153)
org.apache.thrift.transport.TIOStreamTransport.write(TIOStreamTransport.java:145)
org.apache.thrift.protocol.TBinaryProtocol.writeBinary(TBinaryProtocol.java:211)
org.apache.impala.thrift.THdfsFileDesc$THdfsFileDescStandardScheme.write(THdfsFileDesc.java:369)
org.apache.impala.thrift.THdfsFileDesc$THdfsFileDescStandardScheme.write(THdfsFileDesc.java:332)
org.apache.impala.thrift.THdfsFileDesc.write(THdfsFileDesc.java:283)
org.apache.impala.thrift.THdfsPartition$THdfsPartitionStandardScheme.write(THdfsPartition.java:2137)
org.apache.impala.thrift.THdfsPartition$THdfsPartitionStandardScheme.write(THdfsPartition.java:1862)
org.apache.impala.thrift.THdfsPartition.write(THdfsPartition.java:1677)
org.apache.impala.thrift.THdfsTable$THdfsTableStandardScheme.write(THdfsTable.java:1249)
org.apache.impala.thrift.THdfsTable$THdfsTableStandardScheme.write(THdfsTable.java:1076)
org.apache.impala.thrift.THdfsTable.write(THdfsTable.java:939)
org.apache.impala.thrift.TTable$TTableStandardScheme.write(TTable.java:1632)
org.apache.impala.thrift.TTable$TTableStandardScheme.write(TTable.java:1403)
org.apache.impala.thrift.TTable.write(TTable.java:1212)
org.apache.impala.thrift.TCatalogObject$TCatalogObjectStandardScheme.write(TCatalogObject.java:1245)
org.apache.impala.thrift.TCatalogObject$TCatalogObjectStandardScheme.write(TCatalogObject.java:1102)
org.apache.impala.thrift.TCatalogObject.write(TCatalogObject.java:942)
org.apache.thrift.TSerializer.serialize(TSerializer.java:79)
org.apache.impala.catalog.CatalogServiceCatalog$GetCatalogDeltaContext.addCatalogObject(CatalogServiceCatalog.java:591)
org.apache.impala.catalog.CatalogServiceCatalog.addTableToCatalogDeltaHelper(CatalogServiceCatalog.java:1028)
org.apache.impala.catalog.CatalogServiceCatalog.addTableToCatalogDelta(CatalogServiceCatalog.java:974)
org.apache.impala.catalog.CatalogServiceCatalog.addDatabaseToCatalogDelta(CatalogServiceCatalog.java:880)
org.apache.impala.catalog.CatalogServiceCatalog.getCatalogDelta(CatalogServiceCatalog.java:671)
org.apache.impala.service.JniCatalog.getCatalogDelta(JniCatalog.java:135)

and the code stack

grow:119, ByteArrayOutputStream (java.io)
ensureCapacity:93, ByteArrayOutputStream (java.io)
write:153, ByteArrayOutputStream (java.io)
write:145, TIOStreamTransport (org.apache.thrift.transport)
writeBinary:211, TBinaryProtocol (org.apache.thrift.protocol)
write:369, THdfsFileDesc$THdfsFileDescStandardScheme (org.apache.impala.thrift)
write:332, THdfsFileDesc$THdfsFileDescStandardScheme (org.apache.impala.thrift)
write:283, THdfsFileDesc (org.apache.impala.thrift)
write:2137, THdfsPartition$THdfsPartitionStandardScheme (org.apache.impala.thrift)
write:1862, THdfsPartition$THdfsPartitionStandardScheme (org.apache.impala.thrift)
write:1677, THdfsPartition (org.apache.impala.thrift)
write:1249, THdfsTable$THdfsTableStandardScheme (org.apache.impala.thrift)
write:1076, THdfsTable$THdfsTableStandardScheme (org.apache.impala.thrift)
write:939, THdfsTable (org.apache.impala.thrift)
write:1632, TTable$TTableStandardScheme (org.apache.impala.thrift)
write:1403, TTable$TTableStandardScheme (org.apache.impala.thrift)
write:1212, TTable (org.apache.impala.thrift)
write:1245, TCatalogObject$TCatalogObjectStandardScheme (org.apache.impala.thrift)
write:1102, TCatalogObject$TCatalogObjectStandardScheme (org.apache.impala.thrift)
write:942, TCatalogObject (org.apache.impala.thrift)
serialize:79, TSerializer (org.apache.thrift)
addCatalogObject:591, CatalogServiceCatalog$GetCatalogDeltaContext (org.apache.impala.catalog)
addTableToCatalogDeltaHelper:1028, CatalogServiceCatalog (org.apache.impala.catalog)
addTableToCatalogDelta:974, CatalogServiceCatalog (org.apache.impala.catalog)
addDatabaseToCatalogDelta:880, CatalogServiceCatalog (org.apache.impala.catalog)
getCatalogDelta:671, CatalogServiceCatalog (org.apache.impala.catalog)
getCatalogDelta:135, JniCatalog (org.apache.impala.service)

and in file ByteArrayOutputStream.java (Integer.MAX_VALUE=2147483647) code like

private static int hugeCapacity(int minCapacity)
{ if (minCapacity < 0) // overflow 
throw new OutOfMemoryError(); 
return (minCapacity > MAX_ARRAY_SIZE) ? Integer.MAX_VALUE : MAX_ARRAY_SIZE; }

and in ByteArrayOutputStream.java per len=176, and count+ (totally file number times)up to oom

public synchronized void write(byte b[], int off, int len) { 
if ((off < 0) || (off > b.length) || (len < 0) || ((off + len) - b.length > 0))
{ throw new IndexOutOfBoundsException(); }
ensureCapacity(count + len); 
System.arraycopy(b, off, buf, count, len); 
count += len; }

catalog setting

-default_pool_mem_limit=280g \
-mem_limit=330g \
-mem_limit_includes_jvm=true \
-buffer_pool_limit=180g \
-max_hdfs_partitions_parallel_load=50 \
-non_impala_java_vlog=0 \
-inc_stats_size_limit_bytes=4400000000 \
-pull_incremental_statistics=false \
-num_threads_per_core=8 \
-num_metadata_loading_threads=50 \
-num_hdfs_worker_threads=50 \
-num_acceptor_threads=20 \
-accepted_cnxn_setup_thread_pool_size=10 \
-max_row_batches=4000 \
-max_queued_row_batch_bytes=100000000 \
-compact_catalog_topic=true \

statestore setting

-inc_stats_size_limit_bytes=4400000000 \
-pull_incremental_statistics=false \
-compact_catalog_topic=true \

impalad setting

-mem_limit=250g \
-buffer_pool_limit=60g \
-mem_limit_includes_jvm=true \
-default_pool_mem_limit=180g \
-num_metadata_loading_threads=50 \
-num_threads_per_core=8 \
-num_hdfs_worker_threads=50 \
-max_hdfs_partitions_parallel_load=50 \
-num_acceptor_threads=20 \
-accepted_cnxn_setup_thread_pool_size=5 \
-pull_incremental_statistics=false \
-inc_stats_size_limit_bytes=4400000000 \
-compact_catalog_topic=true \

noticed https://issues.apache.org/jira/browse/IMPALA-8667 

set -pull_incremental_statistics=false but true is the same

and https://issues.apache.org/jira/browse/IMPALA-5990

https://github.com/cloudera/Impala/commit/c2184e56ae91bc9c6f04ac0dae1b75261d6d20a2

like catalog object over the limit and not compressed, is there any solutions can query 'describe default.test'