[HIVE-6113] Upgrade DataNucleus [was: Unable to instantiate org.apache.hadoop.hive.metastore.HiveMetaStoreClient]

• Type: Bug
• Status: Closed
• Priority: Critical
• Resolution: Fixed
• Affects Version/s: 0.12.0, 0.13.0, 0.14.0, 1.0.0, 1.2.1
• Fix Version/s: 2.0.0
• Component/s: Database/Schema
• Labels: HiveMetaStoreClient TODOC2.0 metastore unable_instantiate

Environment

hadoop-0.20.2-cdh3u3,hive-0.12.0

• Target Version/s: 1.3.0, 2.0.0
• Assignee: Oleksiy Sayankin
• Reporter: William Stone
• Created: 27/Dec/13 07:07
• Updated: 17/Mar/17 20:33
• Resolved: 04/Jan/16 20:57

Description

CLEAR LIBRARY CACHE

When I exccute SQL "use fdm; desc formatted fdm.tableName;" in python, throw Error as followed.
but when I tryit again , It will success.

2013-12-25 03:01:32,290 ERROR exec.DDLTask (DDLTask.java:execute(435)) - org.apache.hadoop.hive.ql.metadata.HiveException: java.lang.RuntimeException: Unable to instantiate org.apache.hadoop.hive.metastore.HiveMetaStoreClient
at org.apache.hadoop.hive.ql.metadata.Hive.getDatabase(Hive.java:1143)
at org.apache.hadoop.hive.ql.metadata.Hive.databaseExists(Hive.java:1128)
at org.apache.hadoop.hive.ql.exec.DDLTask.switchDatabase(DDLTask.java:3479)
at org.apache.hadoop.hive.ql.exec.DDLTask.execute(DDLTask.java:237)
at org.apache.hadoop.hive.ql.exec.Task.executeTask(Task.java:151)
at org.apache.hadoop.hive.ql.exec.TaskRunner.runSequential(TaskRunner.java:65)
at org.apache.hadoop.hive.ql.Driver.launchTask(Driver.java:1414)
at org.apache.hadoop.hive.ql.Driver.execute(Driver.java:1192)
at org.apache.hadoop.hive.ql.Driver.runInternal(Driver.java:1020)
at org.apache.hadoop.hive.ql.Driver.run(Driver.java:888)
at org.apache.hadoop.hive.cli.CliDriver.processLocalCmd(CliDriver.java:260)
at org.apache.hadoop.hive.cli.CliDriver.processCmd(CliDriver.java:217)
at org.apache.hadoop.hive.cli.CliDriver.processLine(CliDriver.java:507)
at org.apache.hadoop.hive.cli.CliDriver.executeDriver(CliDriver.java:875)
at org.apache.hadoop.hive.cli.CliDriver.run(CliDriver.java:769)
at org.apache.hadoop.hive.cli.CliDriver.main(CliDriver.java:708)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.hadoop.util.RunJar.main(RunJar.java:197)
Caused by: java.lang.RuntimeException: Unable to instantiate org.apache.hadoop.hive.metastore.HiveMetaStoreClient
at org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1217)
at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.<init>(RetryingMetaStoreClient.java:62)
at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:72)
at org.apache.hadoop.hive.ql.metadata.Hive.createMetaStoreClient(Hive.java:2372)
at org.apache.hadoop.hive.ql.metadata.Hive.getMSC(Hive.java:2383)
at org.apache.hadoop.hive.ql.metadata.Hive.getDatabase(Hive.java:1139)
... 20 more
Caused by: java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
at org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1210)
... 25 more
Caused by: javax.jdo.JDODataStoreException: Exception thrown flushing changes to datastore
NestedThrowables:
java.sql.BatchUpdateException: Duplicate entry 'default' for key 'UNIQUE_DATABASE'
at org.datanucleus.api.jdo.NucleusJDOHelper.getJDOExceptionForNucleusException(NucleusJDOHelper.java:451)
at org.datanucleus.api.jdo.JDOTransaction.commit(JDOTransaction.java:165)
at org.apache.hadoop.hive.metastore.ObjectStore.commitTransaction(ObjectStore.java:358)
at org.apache.hadoop.hive.metastore.ObjectStore.createDatabase(ObjectStore.java:404)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.hadoop.hive.metastore.RetryingRawStore.invoke(RetryingRawStore.java:124)
at $Proxy9.createDatabase(Unknown Source)
at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.createDefaultDB_core(HiveMetaStore.java:422)
at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.createDefaultDB(HiveMetaStore.java:441)
at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.init(HiveMetaStore.java:326)
at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.<init>(HiveMetaStore.java:286)
at org.apache.hadoop.hive.metastore.RetryingHMSHandler.<init>(RetryingHMSHandler.java:54)
at org.apache.hadoop.hive.metastore.RetryingHMSHandler.getProxy(RetryingHMSHandler.java:59)
at org.apache.hadoop.hive.metastore.HiveMetaStore.newHMSHandler(HiveMetaStore.java:4060)
at org.apache.hadoop.hive.metastore.HiveMetaStoreClient.<init>(HiveMetaStoreClient.java:121)
... 30 more
Caused by: java.sql.BatchUpdateException: Duplicate entry 'default' for key 'UNIQUE_DATABASE'
at com.mysql.jdbc.PreparedStatement.executeBatchSerially(PreparedStatement.java:2028)
at com.mysql.jdbc.PreparedStatement.executeBatch(PreparedStatement.java:1451)
at com.jolbox.bonecp.StatementHandle.executeBatch(StatementHandle.java:469)
at org.datanucleus.store.rdbms.ParamLoggingPreparedStatement.executeBatch(ParamLoggingPreparedStatement.java:372)
at org.datanucleus.store.rdbms.SQLController.processConnectionStatement(SQLController.java:628)
at org.datanucleus.store.rdbms.SQLController.processStatementsForConnection(SQLController.java:596)
at org.datanucleus.store.rdbms.SQLController$1.transactionFlushed(SQLController.java:683)
at org.datanucleus.store.connection.AbstractManagedConnection.transactionFlushed(AbstractManagedConnection.java:86)
at org.datanucleus.store.connection.ConnectionManagerImpl$2.transactionFlushed(ConnectionManagerImpl.java:454)
at org.datanucleus.TransactionImpl.flush(TransactionImpl.java:199)
at org.datanucleus.TransactionImpl.commit(TransactionImpl.java:263)
at org.datanucleus.api.jdo.JDOTransaction.commit(JDOTransaction.java:98)
... 46 more
Caused by: com.mysql.jdbc.exceptions.jdbc4.MySQLIntegrityConstraintViolationException: Duplicate entry 'default' for key 'UNIQUE_DATABASE'
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
at com.mysql.jdbc.Util.handleNewInstance(Util.java:411)
at com.mysql.jdbc.Util.getInstance(Util.java:386)
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:1039)
at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3609)
at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3541)
at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:2002)
at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:2163)
at com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2624)
at com.mysql.jdbc.PreparedStatement.executeInternal(PreparedStatement.java:2127)
at com.mysql.jdbc.PreparedStatement.executeUpdate(PreparedStatement.java:2427)
at com.mysql.jdbc.PreparedStatement.executeBatchSerially(PreparedStatement.java:1980)
... 57 more

Issue Links

• blocks: HIVE-13931 Add support for HikariCP connection pooling
• duplicates: HIVE-11036 Race condition in DataNucleus makes Metastore to hang
• relates to: HIVE-9543 MetaException(message:Metastore contains multiple versions)
• relates to: HIVE-14152 datanucleus.autoStartMechanismMode should set to 'Ignored' to allow rolling downgrade
• relates to: HIVE-14322 Postgres db issues after Datanucleus 4.x upgrade
• relates to: HIVE-3764 Support metastore version consistency check
• relates to: HIVE-1841 datanucleus.fixedDatastore should be true in hive-default.xml
• relates to: HIVE-12436 Default hive.metastore.schema.verification to true