[FLINK-24062] Exception encountered during timer serialization in Python DataStream API - ASF JIRA

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Type: Bug
Status: Closed
Priority: Major
Resolution: Fixed
Affects Version/s: 1.14.0
Fix Version/s: 1.14.0
Component/s: API / Python
Labels:
- pull-request-available
- release-testing

Description

For the following example:

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import argparse
import logging
import sys

from pyflink.common import WatermarkStrategy, Encoder, Types
from pyflink.datastream import StreamExecutionEnvironment, RuntimeExecutionMode
from pyflink.datastream.connectors import (FileSource, StreamFormat, FileSink, OutputFileConfig,
                                           RollingPolicy)


word_count_data = ["To be, or not to be,--that is the question:--",
                   "Whether 'tis nobler in the mind to suffer",
                   "The slings and arrows of outrageous fortune",
                   "Or to take arms against a sea of troubles,",
                   "And by opposing end them?--To die,--to sleep,--",
                   "No more; and by a sleep to say we end",
                   "The heartache, and the thousand natural shocks",
                   "That flesh is heir to,--'tis a consummation",
                   "Devoutly to be wish'd. To die,--to sleep;--",
                   "To sleep! perchance to dream:--ay, there's the rub;",
                   "For in that sleep of death what dreams may come,",
                   "When we have shuffled off this mortal coil,",
                   "Must give us pause: there's the respect",
                   "That makes calamity of so long life;",
                   "For who would bear the whips and scorns of time,",
                   "The oppressor's wrong, the proud man's contumely,",
                   "The pangs of despis'd love, the law's delay,",
                   "The insolence of office, and the spurns",
                   "That patient merit of the unworthy takes,",
                   "When he himself might his quietus make",
                   "With a bare bodkin? who would these fardels bear,",
                   "To grunt and sweat under a weary life,",
                   "But that the dread of something after death,--",
                   "The undiscover'd country, from whose bourn",
                   "No traveller returns,--puzzles the will,",
                   "And makes us rather bear those ills we have",
                   "Than fly to others that we know not of?",
                   "Thus conscience does make cowards of us all;",
                   "And thus the native hue of resolution",
                   "Is sicklied o'er with the pale cast of thought;",
                   "And enterprises of great pith and moment,",
                   "With this regard, their currents turn awry,",
                   "And lose the name of action.--Soft you now!",
                   "The fair Ophelia!--Nymph, in thy orisons",
                   "Be all my sins remember'd."]


def word_count(input_path, output_path):
    env = StreamExecutionEnvironment.get_execution_environment()
    env.set_runtime_mode(RuntimeExecutionMode.BATCH)
    # write all the data to one file
    env.set_parallelism(1)

    # define the source
    if input_path is not None:
        ds = env.from_source(
            source=FileSource.for_record_stream_format(StreamFormat.text_line_format(),
                                                       input_path)
                             .process_static_file_set().build(),
            watermark_strategy=WatermarkStrategy.for_monotonous_timestamps(),
            source_name="file_source"
        )
    else:
        print("Executing word_count example with default input data set.")
        print("Use --input to specify file input.")
        ds = env.from_collection(word_count_data)

    def split(line):
        yield from line.split()

    # compute word count
    ds = ds.flat_map(split) \
           .map(lambda i: (i, 1), output_type=Types.TUPLE([Types.STRING(), Types.INT()])) \
           .key_by(lambda i: i[0]) \
           .reduce(lambda i, j: (i[0], i[1] + j[1]))

    # define the sink
    if output_path is not None:
        ds.sink_to(
            sink=FileSink.for_row_format(
                base_path=output_path,
                encoder=Encoder.simple_string_encoder())
            .with_output_file_config(
                OutputFileConfig.builder()
                .with_part_prefix("prefix")
                .with_part_suffix(".ext")
                .build())
            .with_rolling_policy(RollingPolicy.default_rolling_policy())
            .build()
        )
    else:
        print("Printing result to stdout. Use --output to specify output path.")
        ds.print()

    # submit for execution
    env.execute()


if __name__ == '__main__':
    logging.basicConfig(stream=sys.stdout, level=logging.INFO, format="%(message)s")

    parser = argparse.ArgumentParser()
    parser.add_argument(
        '--input',
        dest='input',
        required=False,
        help='Input file to process.')
    parser.add_argument(
        '--output',
        dest='output',
        required=False,
        help='Output file to write results to.')

    argv = sys.argv[1:]
    known_args, _ = parser.parse_known_args(argv)

    word_count(known_args.input, known_args.output)

It will throw the following exception:

Traceback (most recent call last):
  File "pyflink/examples/datastream/word_count.py", line 134, in <module>
    word_count(known_args.input, known_args.output)
  File "pyflink/examples/datastream/word_count.py", line 113, in word_count
    env.execute()
  File "/Users/dianfu/venv/examples-37/lib/python3.7/site-packages/pyflink/datastream/stream_execution_environment.py", line 691, in execute
    return JobExecutionResult(self._j_stream_execution_environment.execute(j_stream_graph))
  File "/Users/dianfu/venv/examples-37/lib/python3.7/site-packages/py4j/java_gateway.py", line 1286, in __call__
    answer, self.gateway_client, self.target_id, self.name)
  File "/Users/dianfu/venv/examples-37/lib/python3.7/site-packages/pyflink/util/exceptions.py", line 146, in deco
    return f(*a, **kw)
  File "/Users/dianfu/venv/examples-37/lib/python3.7/site-packages/py4j/protocol.py", line 328, in get_return_value
    format(target_id, ".", name), value)
py4j.protocol.Py4JJavaError: An error occurred while calling o3.execute.
: org.apache.flink.runtime.client.JobExecutionException: Job execution failed.
	at org.apache.flink.runtime.jobmaster.JobResult.toJobExecutionResult(JobResult.java:144)
	at org.apache.flink.runtime.minicluster.MiniClusterJobClient.lambda$getJobExecutionResult$3(MiniClusterJobClient.java:137)
	at java.util.concurrent.CompletableFuture.uniApply(CompletableFuture.java:616)
	at java.util.concurrent.CompletableFuture$UniApply.tryFire(CompletableFuture.java:591)
	at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:488)
	at java.util.concurrent.CompletableFuture.complete(CompletableFuture.java:1975)
	at org.apache.flink.runtime.rpc.akka.AkkaInvocationHandler.lambda$invokeRpc$0(AkkaInvocationHandler.java:250)
	at java.util.concurrent.CompletableFuture.uniWhenComplete(CompletableFuture.java:774)
	at java.util.concurrent.CompletableFuture$UniWhenComplete.tryFire(CompletableFuture.java:750)
	at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:488)
	at java.util.concurrent.CompletableFuture.complete(CompletableFuture.java:1975)
	at org.apache.flink.util.concurrent.FutureUtils.doForward(FutureUtils.java:1389)
	at org.apache.flink.runtime.concurrent.akka.ClassLoadingUtils.lambda$null$1(ClassLoadingUtils.java:93)
	at org.apache.flink.runtime.concurrent.akka.ClassLoadingUtils.runWithContextClassLoader(ClassLoadingUtils.java:68)
	at org.apache.flink.runtime.concurrent.akka.ClassLoadingUtils.lambda$guardCompletionWithContextClassLoader$2(ClassLoadingUtils.java:92)
	at java.util.concurrent.CompletableFuture.uniWhenComplete(CompletableFuture.java:774)
	at java.util.concurrent.CompletableFuture$UniWhenComplete.tryFire(CompletableFuture.java:750)
	at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:488)
	at java.util.concurrent.CompletableFuture.complete(CompletableFuture.java:1975)
	at org.apache.flink.runtime.concurrent.akka.AkkaFutureUtils$1.onComplete(AkkaFutureUtils.java:47)
	at akka.dispatch.OnComplete.internal(Future.scala:300)
	at akka.dispatch.OnComplete.internal(Future.scala:297)
	at akka.dispatch.japi$CallbackBridge.apply(Future.scala:224)
	at akka.dispatch.japi$CallbackBridge.apply(Future.scala:221)
	at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
	at org.apache.flink.runtime.concurrent.akka.AkkaFutureUtils$DirectExecutionContext.execute(AkkaFutureUtils.java:65)
	at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68)
	at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284)
	at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284)
	at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284)
	at akka.pattern.PromiseActorRef.$bang(AskSupport.scala:621)
	at akka.pattern.PipeToSupport$PipeableFuture$$anonfun$pipeTo$1.applyOrElse(PipeToSupport.scala:24)
	at akka.pattern.PipeToSupport$PipeableFuture$$anonfun$pipeTo$1.applyOrElse(PipeToSupport.scala:23)
	at scala.concurrent.Future.$anonfun$andThen$1(Future.scala:532)
	at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
	at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
	at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:60)
	at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:63)
	at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:100)
	at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
	at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
	at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:100)
	at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:49)
	at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:48)
	at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:289)
	at java.util.concurrent.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1067)
	at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1703)
	at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:172)
Caused by: org.apache.flink.runtime.JobException: Recovery is suppressed by NoRestartBackoffTimeStrategy
	at org.apache.flink.runtime.executiongraph.failover.flip1.ExecutionFailureHandler.handleFailure(ExecutionFailureHandler.java:138)
	at org.apache.flink.runtime.executiongraph.failover.flip1.ExecutionFailureHandler.getFailureHandlingResult(ExecutionFailureHandler.java:82)
	at org.apache.flink.runtime.scheduler.DefaultScheduler.handleTaskFailure(DefaultScheduler.java:228)
	at org.apache.flink.runtime.scheduler.DefaultScheduler.maybeHandleTaskFailure(DefaultScheduler.java:218)
	at org.apache.flink.runtime.scheduler.DefaultScheduler.updateTaskExecutionStateInternal(DefaultScheduler.java:209)
	at org.apache.flink.runtime.scheduler.SchedulerBase.updateTaskExecutionState(SchedulerBase.java:679)
	at org.apache.flink.runtime.scheduler.SchedulerNG.updateTaskExecutionState(SchedulerNG.java:79)
	at org.apache.flink.runtime.jobmaster.JobMaster.updateTaskExecutionState(JobMaster.java:441)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at org.apache.flink.runtime.rpc.akka.AkkaRpcActor.lambda$handleRpcInvocation$1(AkkaRpcActor.java:316)
	at org.apache.flink.runtime.concurrent.akka.ClassLoadingUtils.runWithContextClassLoader(ClassLoadingUtils.java:83)
	at org.apache.flink.runtime.rpc.akka.AkkaRpcActor.handleRpcInvocation(AkkaRpcActor.java:314)
	at org.apache.flink.runtime.rpc.akka.AkkaRpcActor.handleRpcMessage(AkkaRpcActor.java:217)
	at org.apache.flink.runtime.rpc.akka.FencedAkkaRpcActor.handleRpcMessage(FencedAkkaRpcActor.java:78)
	at org.apache.flink.runtime.rpc.akka.AkkaRpcActor.handleMessage(AkkaRpcActor.java:163)
	at akka.japi.pf.UnitCaseStatement.apply(CaseStatements.scala:24)
	at akka.japi.pf.UnitCaseStatement.apply(CaseStatements.scala:20)
	at scala.PartialFunction.applyOrElse(PartialFunction.scala:123)
	at scala.PartialFunction.applyOrElse$(PartialFunction.scala:122)
	at akka.japi.pf.UnitCaseStatement.applyOrElse(CaseStatements.scala:20)
	at scala.PartialFunction$OrElse.applyOrElse(PartialFunction.scala:171)
	at scala.PartialFunction$OrElse.applyOrElse(PartialFunction.scala:172)
	at scala.PartialFunction$OrElse.applyOrElse(PartialFunction.scala:172)
	at akka.actor.Actor.aroundReceive(Actor.scala:537)
	at akka.actor.Actor.aroundReceive$(Actor.scala:535)
	at akka.actor.AbstractActor.aroundReceive(AbstractActor.scala:220)
	at akka.actor.ActorCell.receiveMessage(ActorCell.scala:580)
	at akka.actor.ActorCell.invoke(ActorCell.scala:548)
	at akka.dispatch.Mailbox.processMailbox(Mailbox.scala:270)
	at akka.dispatch.Mailbox.run(Mailbox.scala:231)
	at akka.dispatch.Mailbox.exec(Mailbox.scala:243)
	... 4 more
Caused by: java.lang.RuntimeException: Error while waiting for BeamPythonFunctionRunner flush
	at org.apache.flink.streaming.api.operators.python.AbstractPythonFunctionOperator.invokeFinishBundle(AbstractPythonFunctionOperator.java:361)
	at org.apache.flink.streaming.api.operators.python.AbstractPythonFunctionOperator.processElementsOfCurrentKeyIfNeeded(AbstractPythonFunctionOperator.java:257)
	at org.apache.flink.streaming.api.operators.python.AbstractPythonFunctionOperator.setCurrentKey(AbstractPythonFunctionOperator.java:246)
	at org.apache.flink.streaming.api.operators.python.PythonKeyedProcessOperator.setCurrentKey(PythonKeyedProcessOperator.java:225)
	at org.apache.flink.streaming.api.operators.AbstractStreamOperator.setKeyContextElement(AbstractStreamOperator.java:504)
	at org.apache.flink.streaming.api.operators.AbstractStreamOperator.setKeyContextElement1(AbstractStreamOperator.java:491)
	at org.apache.flink.streaming.api.operators.OneInputStreamOperator.setKeyContextElement(OneInputStreamOperator.java:36)
	at org.apache.flink.streaming.runtime.tasks.OneInputStreamTask$StreamTaskNetworkOutput.emitRecord(OneInputStreamTask.java:229)
	at org.apache.flink.streaming.api.operators.sort.SortingDataInput.emitNextSortedRecord(SortingDataInput.java:207)
	at org.apache.flink.streaming.api.operators.sort.SortingDataInput.emitNext(SortingDataInput.java:187)
	at org.apache.flink.streaming.runtime.io.StreamOneInputProcessor.processInput(StreamOneInputProcessor.java:65)
	at org.apache.flink.streaming.runtime.tasks.StreamTask.processInput(StreamTask.java:489)
	at org.apache.flink.streaming.runtime.tasks.mailbox.MailboxProcessor.runMailboxLoop(MailboxProcessor.java:203)
	at org.apache.flink.streaming.runtime.tasks.StreamTask.runMailboxLoop(StreamTask.java:819)
	at org.apache.flink.streaming.runtime.tasks.StreamTask.executeInvoke(StreamTask.java:746)
	at org.apache.flink.streaming.runtime.tasks.StreamTask.runWithCleanUpOnFail(StreamTask.java:785)
	at org.apache.flink.streaming.runtime.tasks.StreamTask.invoke(StreamTask.java:728)
	at org.apache.flink.runtime.taskmanager.Task.doRun(Task.java:786)
	at org.apache.flink.runtime.taskmanager.Task.run(Task.java:572)
	at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.RuntimeException: Failed to close remote bundle
	at org.apache.flink.streaming.api.runners.python.beam.BeamPythonFunctionRunner.finishBundle(BeamPythonFunctionRunner.java:377)
	at org.apache.flink.streaming.api.runners.python.beam.BeamPythonFunctionRunner.flush(BeamPythonFunctionRunner.java:361)
	at org.apache.flink.streaming.api.operators.python.AbstractPythonFunctionOperator.lambda$invokeFinishBundle$2(AbstractPythonFunctionOperator.java:340)
	at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
	at java.util.concurrent.FutureTask.run(FutureTask.java:266)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
	... 1 more
Caused by: java.util.concurrent.ExecutionException: org.apache.beam.sdk.coders.CoderException: java.io.EOFException
	at java.util.concurrent.CompletableFuture.reportGet(CompletableFuture.java:357)
	at java.util.concurrent.CompletableFuture.get(CompletableFuture.java:1908)
	at org.apache.beam.sdk.fn.data.CompletableFutureInboundDataClient.awaitCompletion(CompletableFutureInboundDataClient.java:48)
	at org.apache.beam.sdk.fn.data.BeamFnDataInboundObserver.awaitCompletion(BeamFnDataInboundObserver.java:73)
	at org.apache.beam.runners.fnexecution.control.SdkHarnessClient$BundleProcessor$ActiveBundle.close(SdkHarnessClient.java:542)
	at org.apache.beam.runners.fnexecution.control.DefaultJobBundleFactory$SimpleStageBundleFactory$1.close(DefaultJobBundleFactory.java:555)
	at org.apache.flink.streaming.api.runners.python.beam.BeamPythonFunctionRunner.finishBundle(BeamPythonFunctionRunner.java:375)
	... 7 more
Caused by: org.apache.beam.sdk.coders.CoderException: java.io.EOFException
	at org.apache.beam.sdk.coders.StringUtf8Coder.decode(StringUtf8Coder.java:104)
	at org.apache.beam.sdk.coders.StringUtf8Coder.decode(StringUtf8Coder.java:90)
	at org.apache.beam.runners.core.construction.Timer$Coder.decode(Timer.java:195)
	at org.apache.beam.runners.core.construction.Timer$Coder.decode(Timer.java:158)
	at org.apache.beam.sdk.fn.data.DecodingFnDataReceiver.accept(DecodingFnDataReceiver.java:43)
	at org.apache.beam.sdk.fn.data.DecodingFnDataReceiver.accept(DecodingFnDataReceiver.java:25)
	at org.apache.beam.sdk.fn.data.BeamFnDataInboundObserver.accept(BeamFnDataInboundObserver.java:65)
	at org.apache.beam.sdk.fn.data.BeamFnDataInboundObserver.accept(BeamFnDataInboundObserver.java:29)
	at org.apache.beam.sdk.fn.data.BeamFnDataGrpcMultiplexer$InboundObserver.onNext(BeamFnDataGrpcMultiplexer.java:178)
	at org.apache.beam.sdk.fn.data.BeamFnDataGrpcMultiplexer$InboundObserver.onNext(BeamFnDataGrpcMultiplexer.java:127)
	at org.apache.beam.vendor.grpc.v1p26p0.io.grpc.stub.ServerCalls$StreamingServerCallHandler$StreamingServerCallListener.onMessage(ServerCalls.java:251)
	at org.apache.beam.vendor.grpc.v1p26p0.io.grpc.ForwardingServerCallListener.onMessage(ForwardingServerCallListener.java:33)
	at org.apache.beam.vendor.grpc.v1p26p0.io.grpc.Contexts$ContextualizedServerCallListener.onMessage(Contexts.java:76)
	at org.apache.beam.vendor.grpc.v1p26p0.io.grpc.internal.ServerCallImpl$ServerStreamListenerImpl.messagesAvailableInternal(ServerCallImpl.java:309)
	at org.apache.beam.vendor.grpc.v1p26p0.io.grpc.internal.ServerCallImpl$ServerStreamListenerImpl.messagesAvailable(ServerCallImpl.java:292)
	at org.apache.beam.vendor.grpc.v1p26p0.io.grpc.internal.ServerImpl$JumpToApplicationThreadServerStreamListener$1MessagesAvailable.runInContext(ServerImpl.java:782)
	at org.apache.beam.vendor.grpc.v1p26p0.io.grpc.internal.ContextRunnable.run(ContextRunnable.java:37)
	at org.apache.beam.vendor.grpc.v1p26p0.io.grpc.internal.SerializingExecutor.run(SerializingExecutor.java:123)
	... 3 more
Caused by: java.io.EOFException
	at org.apache.beam.sdk.util.VarInt.decodeLong(VarInt.java:73)
	at org.apache.beam.sdk.util.VarInt.decodeInt(VarInt.java:56)
	at org.apache.beam.sdk.coders.StringUtf8Coder.readString(StringUtf8Coder.java:55)
	at org.apache.beam.sdk.coders.StringUtf8Coder.decode(StringUtf8Coder.java:100)
	... 20 more

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links to

GitHub Pull Request #17065

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Assignee:: Dian Fu

Reporter:: Dian Fu

Votes:: 0 Vote for this issue

Watchers:: 1 Start watching this issue

Dates

Created:: 31/Aug/21 05:13

Updated:: 01/Sep/21 09:12

Resolved:: 01/Sep/21 03:46