[CTAKES-524] trying to run YTEX but unable to setup dictionary database in MSSQL

• Type: Bug
• Status: Closed
• Priority: Major
• Resolution: Won't Fix
• Affects Version/s: 4.0.0
• Component/s: ctakes-ytex

Docs Text

C:\apache-ctakes-4.0.0\bin\ctakes-ytex\scripts>java -cp C:\apache-ctakes-4.0.0\lib\ant-1.9.2.jar;C:\apache-ctakes-4.0.0\lib\ant-launcher-1.9.2.jar;C:\apache-ctakes-4.0.0\lib\ant-contrib-1.0b3.jar org.apache.tools.ant.Main -f build-setup.xml all
Buildfile: C:\apache-ctakes-4.0.0\bin\ctakes-ytex\scripts\build-setup.xml

dbping:

dbping:
     [java] DBPing: connection succeeded

templateToConfig.init:

templateToConfig.extractTemplates:
     [echo] unpacking ytex templates from C:\apache-ctakes-4.0.0\lib\ctakes-ytex-res-4.0.0.jar to C:\apache-ctakes-4.0.0/resources
    [unzip] Expanding: C:\apache-ctakes-4.0.0\lib\ctakes-ytex-res-4.0.0.jar into C:\apache-ctakes-4.0.0\resources

templateToConfig.updateConfig:
     [echo] config.source.dir = C:\apache-ctakes-4.0.0/resources
     [echo] config.generated.dir = C:\apache-ctakes-4.0.0/resources
     [copy] Copying 6 files to C:\apache-ctakes-4.0.0\resources

templateToConfig:

setupDatabase:

init:

umls.check.mrconso:
     [echo] umls.schema dbo
     [echo] umls.catalog YTEX
      [sql] Executing commands
      [sql] 1 of 1 SQL statements executed successfully
     [echo] mrconso.out = 1
     [echo]
   [delete] Deleting: C:\Users\kumrajen\AppData\Local\Temp\mrconso-check.txt
     [echo] mrconso.exists = true

umls.all:
     [echo] mrconso.exists = true

init:

umls.dropAuiFword:
     [echo] drop ytex umls_aui_fword table

jdbc.sqlcmd:
     [echo] db.schemadbo
     [echo] umls.schema dbo
     [echo] umls.catalog YTEX
     [echo] execute ./mssql/./umls/drop_tables.sql
     [copy] Copying 1 file to C:\Users\kumrajen\AppData\Local\Temp
     [echo] executing C:\Users\kumrajen\AppData\Local\Temp\ytex2018208138.sql
      [sql] Executing resource: C:\Users\kumrajen\AppData\Local\Temp\ytex2018208138.sql
      [sql] 2 of 2 SQL statements executed successfully
   [delete] Deleting: C:\Users\kumrajen\AppData\Local\Temp\ytex2018208138.sql
   [delete] Deleting: C:\Users\kumrajen\AppData\Local\Temp\ytex530618693use.sql

umls.setupAuiFword:
     [echo] create ytex umls_aui_fword tables

jdbc.sqlcmd:
     [echo] db.schemadbo
     [echo] umls.schema dbo
     [echo] umls.catalog YTEX
     [echo] execute ./mssql/./umls/create_tables.sql
     [copy] Copying 1 file to C:\Users\kumrajen\AppData\Local\Temp
     [echo] executing C:\Users\kumrajen\AppData\Local\Temp\ytex600409625.sql
      [sql] Executing resource: C:\Users\kumrajen\AppData\Local\Temp\ytex600409625.sql
      [sql] 2 of 2 SQL statements executed successfully
   [delete] Deleting: C:\Users\kumrajen\AppData\Local\Temp\ytex600409625.sql
   [delete] Deleting: C:\Users\kumrajen\AppData\Local\Temp\ytex385602631use.sql
     [echo] setting up umls_aui_fword table. please be patient - this can take a while
     [java] log4j: reset attribute= "false".
     [java] log4j: Threshold ="null".
     [java] log4j: Retreiving an instance of org.apache.log4j.Logger.
     [java] log4j: Setting [ProgressAppender] additivity to [false].
     [java] log4j: Level value for ProgressAppender is [INFO].
     [java] log4j: ProgressAppender level set to INFO
     [java] log4j: Class name: [org.apache.log4j.ConsoleAppender]
     [java] log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
     [java] log4j: Setting property [conversionPattern] to [%m].
     [java] log4j: Adding appender named [noEolAppender] to category [ProgressAppender].
     [java] log4j: Retreiving an instance of org.apache.log4j.Logger.
     [java] log4j: Setting [ProgressDone] additivity to [false].
     [java] log4j: Level value for ProgressDone is [INFO].
     [java] log4j: ProgressDone level set to INFO
     [java] log4j: Class name: [org.apache.log4j.ConsoleAppender]
     [java] log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
     [java] log4j: Setting property [conversionPattern] to [%m%n].
     [java] log4j: Adding appender named [eolAppender] to category [ProgressDone].
     [java] log4j: Level value for root is [INFO].
     [java] log4j: root level set to INFO
     [java] log4j: Class name: [org.apache.log4j.ConsoleAppender]
     [java] log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
     [java] log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy HH:mm:ss} %5p %c{1} - %m%n].
     [java] log4j: Adding appender named [consoleAppender] to category [root].
     [java] 23 Oct 2018 16:39:19 INFO SetupAuiFirstWord - loading lvg.properties from:/C:/apache-ctakes-4.0.0/resources/org/apache/ctakes/lvg/data/config/lvg.properties
     [java] 23 Oct 2018 16:39:19 INFO ENGINE - open start - state not modified
     [java] 23 Oct 2018 16:39:19 INFO ENGINE - dataFileCache open start
     [java] 23 Oct 2018 16:39:19 INFO ENGINE - dataFileCache open end
     [java] 23 Oct 2018 16:39:20 INFO ClassPathXmlApplicationContext - Refreshing org.springframework.context.support.ClassPathXmlApplicationContext@c7ba306: startup date [Tue Oct 23 16:39:20 IST 2018]; root of context hierarchy
     [java] 23 Oct 2018 16:39:20 INFO XmlBeanDefinitionReader - Loading XML bean definitions from URL [jar:file:/C:/apache-ctakes-4.0.0/lib/ctakes-ytex-res-4.0.0.jar!/org/apache/ctakes/ytex/kernelBeanRefContext.xml]
     [java] 23 Oct 2018 16:39:20 INFO XmlBeanDefinitionReader - Loading XML bean definitions from URL [jar:file:/C:/apache-ctakes-4.0.0/lib/ctakes-ytex-web-4.0.0-classes.jar!/org/apache/ctakes/ytex/kernelBeanRefContext.xml]
     [java] 23 Oct 2018 16:39:20 INFO DefaultListableBeanFactory - Overriding bean definition for bean 'kernelApplicationContext': replacing [Generic bean: class [org.springframework.context.support.ClassPathXmlApplicationContext]; scope=; abstract=false; lazyInit=false; autowireMode=0; dependencyCheck=0; autowireCandidate=true; primary=false; factoryBeanName=null; factoryMethodName=null; initMethodName=null; destroyMethodName=null; defined in URL [jar:file:/C:/apache-ctakes-4.0.0/lib/ctakes-ytex-res-4.0.0.jar!/org/apache/ctakes/ytex/kernelBeanRefContext.xml]] with [Generic bean: class [org.springframework.context.support.ClassPathXmlApplicationContext]; scope=; abstract=false; lazyInit=false; autowireMode=0; dependencyCheck=0; autowireCandidate=true; primary=false; factoryBeanName=null; factoryMethodName=null; initMethodName=null; destroyMethodName=null; defined in URL [jar:file:/C:/apache-ctakes-4.0.0/lib/ctakes-ytex-web-4.0.0-classes.jar!/org/apache/ctakes/ytex/kernelBeanRefContext.xml]]
     [java] 23 Oct 2018 16:39:20 INFO DefaultListableBeanFactory - Pre-instantiating singletons in org.springframework.beans.factory.support.DefaultListableBeanFactory@615091b8: defining beans [kernelApplicationContext]; root of factory hierarchy
     [java] 23 Oct 2018 16:39:20 INFO ClassPathXmlApplicationContext - Refreshing org.springframework.context.support.ClassPathXmlApplicationContext@6f0b0a5e: startup date [Tue Oct 23 16:39:20 IST 2018]; root of context hierarchy
     [java] 23 Oct 2018 16:39:20 INFO XmlBeanDefinitionReader - Loading XML bean definitions from class path resource [org/apache/ctakes/ytex/beans-datasource.xml]
     [java] 23 Oct 2018 16:39:20 INFO XmlBeanDefinitionReader - Loading XML bean definitions from class path resource [org/apache/ctakes/ytex/beans-kernel.hbm.xml]
     [java] 23 Oct 2018 16:39:20 INFO XmlBeanDefinitionReader - Loading XML bean definitions from class path resource [org/apache/ctakes/ytex/beans-kernel.xml]
     [java] 23 Oct 2018 16:39:20 INFO PropertyPlaceholderConfigurer - Loading properties file from class path resource [org/apache/ctakes/ytex/ytex-default.properties]
     [java] 23 Oct 2018 16:39:20 INFO PropertyPlaceholderConfigurer - Loading properties file from class path resource [org/apache/ctakes/ytex/ytex.properties]
     [java] 23 Oct 2018 16:39:20 INFO PropertyPlaceholderConfigurer - Loading properties file from class path resource [org/apache/ctakes/ytex/ytex-umls.properties]
     [java] 23 Oct 2018 16:39:20 INFO DefaultListableBeanFactory - Pre-instantiating singletons in org.springframework.beans.factory.support.DefaultListableBeanFactory@6063d80a: defining beans [org.springframework.beans.factory.config.PropertyPlaceholderConfigurer#0,ytexProperties,hibernateProperties,dataSource,txAdvice,txTemplate,txTemplateNew,transactionManager,sessionFactory,org.springframework.aop.config.internalAutoProxyCreator,daoOperation,umlsDaoOperation,exporterOperation,wekaImporter,mapperOperation,treeOperation,utilOperation,corpusEvaluatorOperation,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#0,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#1,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#2,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#3,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#4,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#5,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#6,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#7,kernelEvaluationDao,conceptDao,umlsDao,wekaBagOfWordsExporter,gramMatrixExporter,documentResultInstanceImporter,wekaResultsImporter,classifierEvaluationDao,libSVMGramMatrixExporter,rGramMatrixExporter,libsvmUtil,instanceTreeBuilder,abstractNormKernel,equalityKernel,atttributeProductKernel,cacheManager,abstractCorpusKernelEvaluator,foldGenerator,kernelUtil,baseClassifierEvaluationParser,semiLEvaluationParser,libSVMParser,svmLightParser,svmlinParser,ClassifierEvaluationImporter,sparseDataExporter,sparseDataFormatterFactory,svmLightFormatterFactory,libSVMFormatterFactory,svmLinFormatterFactory,sgtFormatterFactory,sparseMatrixFormatterFactory,semiLFormatterFactory,wekaFormatterFactory,instanceDataExporter,infogainAttributeEval,rankerSearch,infogainAttributeSelection,wekaAttributeEvaluator,infoContentEvaluator,intrinsicInfoContentEvaluator,imputedFeatureEvaluator,cytoscapeHelper,abstractKernelCacheAdvice,pageRankService]; root of factory hierarchy
     [java] 23 Oct 2018 16:39:20 INFO PropertiesFactoryBean - Loading properties file from class path resource [org/apache/ctakes/ytex/ytex.properties]
     [java] 23 Oct 2018 16:39:21 INFO Version - HCANN000001: Hibernate Commons Annotations {4.0.2.Final}
     [java] 23 Oct 2018 16:39:21 INFO Version - HHH000412: Hibernate Core {4.2.6.Final}
     [java] 23 Oct 2018 16:39:21 INFO Environment - HHH000206: hibernate.properties not found
     [java] 23 Oct 2018 16:39:21 INFO Environment - HHH000021: Bytecode provider name : javassist
     [java] 23 Oct 2018 16:39:24 INFO Dialect - HHH000400: Using dialect: org.hibernate.dialect.SQLServerDialect
     [java] 23 Oct 2018 16:39:24 INFO TransactionFactoryInitiator - HHH000399: Using default transaction strategy (direct JDBC transactions)
     [java] 23 Oct 2018 16:39:24 INFO ASTQueryTranslatorFactory - HHH000397: Using ASTQueryTranslatorFactory
     [java] 23 Oct 2018 16:39:24 INFO UpdateTimestampsCache - HHH000250: Starting update timestamps cache at region: org.hibernate.cache.spi.UpdateTimestampsCache
     [java] 23 Oct 2018 16:39:24 INFO StandardQueryCache - HHH000248: Starting query cache at region: org.hibernate.cache.internal.StandardQueryCache
     [java] WARNING: An illegal reflective access operation has occurred
     [java] WARNING: Illegal reflective access by javassist.util.proxy.SecurityActions (file:/C:/apache-ctakes-4.0.0/lib/javassist-3.15.0-GA.jar) to method java.lang.ClassLoader.defineClass(java.lang.String,byte[],int,int,java.security.ProtectionDomain)
     [java] WARNING: Please consider reporting this to the maintainers of javassist.util.proxy.SecurityActions
     [java] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
     [java] WARNING: All illegal access operations will be denied in a future release
     [java] 23 Oct 2018 16:39:24 INFO HibernateTransactionManager - Using DataSource [org.apache.commons.dbcp.BasicDataSource@1cf336fd] of Hibernate SessionFactory for HibernateTransactionManager
     [java] Exception in thread "main" java.lang.ExceptionInInitializerError
     [java] at org.apache.ctakes.ytex.tools.SetupAuiFirstWord.setupAuiFirstWord(SetupAuiFirstWord.java:190)
     [java] at org.apache.ctakes.ytex.tools.SetupAuiFirstWord.main(SetupAuiFirstWord.java:186)
     [java] Caused by: org.springframework.beans.factory.access.BootstrapException: Unable to initialize group definition. Group resource name [classpath*:org/apache/ctakes/ytex/kernelBeanRefContext.xml], factory key [kernelApplicationContext]; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'kernelApplicationContext' defined in URL [jar:file:/C:/apache-ctakes-4.0.0/lib/ctakes-ytex-web-4.0.0-classes.jar!/org/apache/ctakes/ytex/kernelBeanRefContext.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [org.springframework.context.support.ClassPathXmlApplicationContext]: Constructor threw exception; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'gramMatrixExporter' defined in class path resource [org/apache/ctakes/ytex/beans-kernel.xml]: Initialization of bean failed; nested exception is org.springframework.beans.FatalBeanException: Failed to obtain BeanInfo for class [org.apache.ctakes.ytex.weka.GramMatrixExporterImpl]; nested exception is java.beans.IntrospectionException: type mismatch between read and write methods
     [java] at org.springframework.beans.factory.access.SingletonBeanFactoryLocator.useBeanFactory(SingletonBeanFactoryLocator.java:386)
     [java] at org.apache.ctakes.ytex.kernel.KernelContextHolder.<clinit>(KernelContextHolder.java:29)
     [java] ... 2 more
     [java] Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'kernelApplicationContext' defined in URL [jar:file:/C:/apache-ctakes-4.0.0/lib/ctakes-ytex-web-4.0.0-classes.jar!/org/apache/ctakes/ytex/kernelBeanRefContext.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [org.springframework.context.support.ClassPathXmlApplicationContext]: Constructor threw exception; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'gramMatrixExporter' defined in class path resource [org/apache/ctakes/ytex/beans-kernel.xml]: Initialization of bean failed; nested exception is org.springframework.beans.FatalBeanException: Failed to obtain BeanInfo for class [org.apache.ctakes.ytex.weka.GramMatrixExporterImpl]; nested exception is java.beans.IntrospectionException: type mismatch between read and write methods
     [java] at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:288)
     [java] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:1035)
     [java] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:939)
     [java] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:485)
     [java] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:456)
     [java] at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:294)
     [java] at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:225)
     [java] at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:291)
     [java] at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193)
     [java] at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:609)
     [java] at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:918)
     [java] at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:469)
     [java] at org.springframework.context.access.ContextSingletonBeanFactoryLocator.initializeDefinition(ContextSingletonBeanFactoryLocator.java:143)
     [java] at org.springframework.beans.factory.access.SingletonBeanFactoryLocator.useBeanFactory(SingletonBeanFactoryLocator.java:381)
     [java] ... 3 more
     [java] Caused by: org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [org.springframework.context.support.ClassPathXmlApplicationContext]: Constructor threw exception; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'gramMatrixExporter' defined in class path resource [org/apache/ctakes/ytex/beans-kernel.xml]: Initialization of bean failed; nested exception is org.springframework.beans.FatalBeanException: Failed to obtain BeanInfo for class [org.apache.ctakes.ytex.weka.GramMatrixExporterImpl]; nested exception is java.beans.IntrospectionException: type mismatch between read and write methods
     [java] at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:162)
     [java] at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:110)
     [java] at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:280)
     [java] ... 16 more
     [java] Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'gramMatrixExporter' defined in class path resource [org/apache/ctakes/ytex/beans-kernel.xml]: Initialization of bean failed; nested exception is org.springframework.beans.FatalBeanException: Failed to obtain BeanInfo for class [org.apache.ctakes.ytex.weka.GramMatrixExporterImpl]; nested exception is java.beans.IntrospectionException: type mismatch between read and write methods
     [java] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:527)
     [java] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:456)
     [java] at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:294)
     [java] at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:225)
     [java] at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:291)
     [java] at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193)
     [java] at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:609)
     [java] at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:918)
     [java] at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:469)
     [java] at org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:139)
     [java] at org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:93)
     [java] at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
     [java] at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
     [java] at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
     [java] at java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:488)
     [java] at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:147)
     [java] ... 18 more
     [java] Caused by: org.springframework.beans.FatalBeanException: Failed to obtain BeanInfo for class [org.apache.ctakes.ytex.weka.GramMatrixExporterImpl]; nested exception is java.beans.IntrospectionException: type mismatch between read and write methods
     [java] at org.springframework.beans.CachedIntrospectionResults.<init>(CachedIntrospectionResults.java:262)
     [java] at org.springframework.beans.CachedIntrospectionResults.forClass(CachedIntrospectionResults.java:149)
     [java] at org.springframework.beans.BeanWrapperImpl.getCachedIntrospectionResults(BeanWrapperImpl.java:324)
     [java] at org.springframework.beans.BeanWrapperImpl.getPropertyDescriptors(BeanWrapperImpl.java:331)
     [java] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.filterPropertyDescriptorsForDependencyCheck(AbstractAutowireCapableBeanFactory.java:1242)
     [java] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1101)
     [java] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:517)
     [java] ... 33 more
     [java] Caused by: java.beans.IntrospectionException: type mismatch between read and write methods
     [java] at java.desktop/java.beans.PropertyDescriptor.findPropertyType(PropertyDescriptor.java:700)
     [java] at java.desktop/java.beans.PropertyDescriptor.setReadMethod(PropertyDescriptor.java:281)
     [java] at org.springframework.beans.ExtendedBeanInfo.addOrUpdatePropertyDescriptor(ExtendedBeanInfo.java:282)
     [java] at org.springframework.beans.ExtendedBeanInfo.addOrUpdatePropertyDescriptor(ExtendedBeanInfo.java:180)
     [java] at org.springframework.beans.ExtendedBeanInfo.<init>(ExtendedBeanInfo.java:100)
     [java] at org.springframework.beans.CachedIntrospectionResults.<init>(CachedIntrospectionResults.java:224)
     [java] ... 39 more
     [java] 23 Oct 2018 16:39:24 INFO DefaultListableBeanFactory - Destroying singletons in org.springframework.beans.factory.support.DefaultListableBeanFactory@6063d80a: defining beans [org.springframework.beans.factory.config.PropertyPlaceholderConfigurer#0,ytexProperties,hibernateProperties,dataSource,txAdvice,txTemplate,txTemplateNew,transactionManager,sessionFactory,org.springframework.aop.config.internalAutoProxyCreator,daoOperation,umlsDaoOperation,exporterOperation,wekaImporter,mapperOperation,treeOperation,utilOperation,corpusEvaluatorOperation,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#0,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#1,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#2,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#3,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#4,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#5,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#6,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#7,kernelEvaluationDao,conceptDao,umlsDao,wekaBagOfWordsExporter,gramMatrixExporter,documentResultInstanceImporter,wekaResultsImporter,classifierEvaluationDao,libSVMGramMatrixExporter,rGramMatrixExporter,libsvmUtil,instanceTreeBuilder,abstractNormKernel,equalityKernel,atttributeProductKernel,cacheManager,abstractCorpusKernelEvaluator,foldGenerator,kernelUtil,baseClassifierEvaluationParser,semiLEvaluationParser,libSVMParser,svmLightParser,svmlinParser,ClassifierEvaluationImporter,sparseDataExporter,sparseDataFormatterFactory,svmLightFormatterFactory,libSVMFormatterFactory,svmLinFormatterFactory,sgtFormatterFactory,sparseMatrixFormatterFactory,semiLFormatterFactory,wekaFormatterFactory,instanceDataExporter,infogainAttributeEval,rankerSearch,infogainAttributeSelection,wekaAttributeEvaluator,infoContentEvaluator,intrinsicInfoContentEvaluator,imputedFeatureEvaluator,cytoscapeHelper,abstractKernelCacheAdvice,pageRankService]; root of factory hierarchy
     [java] 23 Oct 2018 16:39:24 INFO DefaultListableBeanFactory - Destroying singletons in org.springframework.beans.factory.support.DefaultListableBeanFactory@615091b8: defining beans [kernelApplicationContext]; root of factory hierarchy

BUILD FAILED
C:\apache-ctakes-4.0.0\bin\ctakes-ytex\scripts\build-setup.xml:55: The following error occurred while executing this line:
C:\apache-ctakes-4.0.0\bin\ctakes-ytex\scripts\data\build.xml:145: The following error occurred while executing this line:
C:\apache-ctakes-4.0.0\bin\ctakes-ytex\scripts\data\build.xml:263: Java returned: 1

Total time: 17 seconds

• Assignee: Unassigned
• Reporter: Rajendra kumar
• Created: 23/Oct/18 11:22
• Updated: 24/Oct/18 10:47
• Resolved: 24/Oct/18 10:47

Description

I gone through the installation guide but unable to fix the errors while executing the build-setup.xml file.

command : ..\..\ant.bat  build-setup.xml all > my_output.out 2>&1