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  1. cTAKES
  2. CTAKES-112

UIMA CVD: java.lang.OutOfMemoryError: Java heap space when using the AggregatePlaintextUMLSProcessor.xml

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    • Improvement
    • Status: Closed
    • Major
    • Resolution: Won't Do
    • None
    • None
    • None
    • None

    Description

      I think this happens if we try to load multiple AE's in the CVD. Does UIMA CVD/CPE not clean up the resources?

      From Pete:
      Exception in thread "AWT-EventQueue-0" java.lang.OutOfMemoryError: Java heap space
      at clear.model.OneVsAllModel.loadAux(OneVsAllModel.java:98)
      at clear.model.OneVsAllModel.load(OneVsAllModel.java:88)
      at clear.model.AbstractModel.<init>(AbstractModel.java:58)
      at clear.model.AbstractMultiModel.<init>(AbstractMultiModel.java:51)
      at clear.model.OneVsAllModel.<init>(OneVsAllModel.java:56)
      at clear.decode.OneVsAllDecoder.<init>(OneVsAllDecoder.java:52)
      at org.apache.ctakes.dependency.parser.ae.ClearParserUtil.createParser(ClearParserUtil.java:97)
      at org.apache.ctakes.dependency.parser.ae.ClearParserDependencyParserAE.initialize(ClearParserDependencyParserAE.java:143)
      at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
      at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
      at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
      at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
      at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
      at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
      at org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
      at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
      at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
      at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
      at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
      at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
      at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
      at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:354)
      at org.apache.uima.tools.cvd.MainFrame.setupAE(MainFrame.java:1484)
      at org.apache.uima.tools.cvd.MainFrame.loadAEDescriptor(MainFrame.java:477)
      at org.apache.uima.tools.cvd.control.AnnotatorOpenEventHandler.actionPerformed(AnnotatorOpenEventHandler.java:52)
      at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2018)
      at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2341)
      at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
      at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
      at javax.swing.AbstractButton.doClick(AbstractButton.java:376)
      at javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:833)
      at com.apple.laf.AquaMenuItemUI.doClick(AquaMenuItemUI.java:157)
      Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException

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            Unassigned Unassigned
            chenpei Pei Chen
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              Created:
              Updated:
              Resolved: