Details
Description
Usually, ObjectId is using for `_id` key, but sometimes you can deal with int and str keys. Reading from such MongoDB collection will raise errors.
Integer `_id` key:
Traceback (most recent call last): File "apache_beam/runners/common.py", line 1239, in apache_beam.runners.common.DoFnRunner.process File "apache_beam/runners/common.py", line 587, in apache_beam.runners.common.SimpleInvoker.invoke_process File "apache_beam/runners/common.py", line 1374, in apache_beam.runners.common._OutputProcessor.process_outputs File "/venv/lib/python3.7/site-packages/apache_beam/runners/worker/bundle_processor.py", line 1426, in process element) File "/venv/lib/python3.7/site-packages/apache_beam/io/iobase.py", line 1545, in initial_restriction range_tracker = element_source.get_range_tracker(None, None) File "/venv/lib/python3.7/site-packages/apache_beam/io/mongodbio.py", line 243, in get_range_tracker start_position, stop_position) File "/venv/lib/python3.7/site-packages/apache_beam/io/mongodbio.py", line 359, in _replace_none_positions stop_position = _ObjectIdHelper.increment_id(last_doc_id, 1) File "/venv/lib/python3.7/site-packages/apache_beam/io/mongodbio.py", line 418, in increment_id id_number = _ObjectIdHelper.id_to_int(object_id) File "/venv/lib/python3.7/site-packages/apache_beam/io/mongodbio.py", line 383, in id_to_int ints = struct.unpack('>III', id.binary) AttributeError: 'int' object has no attribute 'binary' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/data-pipelines/data_pipelines/mongo_to_bq_raw.py", line 325, in <module> sys.exit(run()) File "/data-pipelines/data_pipelines/mongo_to_bq_raw.py", line 240, in run options=options, ingestion_ts=ingestion_ts, table_name=table_name File "/venv/lib/python3.7/site-packages/apache_beam/pipeline.py", line 582, in __exit__ self.result = self.run() File "/venv/lib/python3.7/site-packages/apache_beam/pipeline.py", line 561, in run return self.runner.run_pipeline(self, self._options) File "/venv/lib/python3.7/site-packages/apache_beam/runners/direct/direct_runner.py", line 126, in run_pipeline return runner.run_pipeline(pipeline, options) File "/venv/lib/python3.7/site-packages/apache_beam/runners/portability/fn_api_runner/fn_runner.py", line 183, in run_pipeline pipeline.to_runner_api(default_environment=self._default_environment)) File "/venv/lib/python3.7/site-packages/apache_beam/runners/portability/fn_api_runner/fn_runner.py", line 193, in run_via_runner_api return self.run_stages(stage_context, stages) File "/venv/lib/python3.7/site-packages/apache_beam/runners/portability/fn_api_runner/fn_runner.py", line 360, in run_stages bundle_context_manager, File "/venv/lib/python3.7/site-packages/apache_beam/runners/portability/fn_api_runner/fn_runner.py", line 556, in _run_stage bundle_manager) File "/venv/lib/python3.7/site-packages/apache_beam/runners/portability/fn_api_runner/fn_runner.py", line 596, in _run_bundle data_input, data_output, input_timers, expected_timer_output) File "/venv/lib/python3.7/site-packages/apache_beam/runners/portability/fn_api_runner/fn_runner.py", line 897, in process_bundle result_future = self._worker_handler.control_conn.push(process_bundle_req) File "/venv/lib/python3.7/site-packages/apache_beam/runners/portability/fn_api_runner/worker_handlers.py", line 380, in push response = self.worker.do_instruction(request) File "/venv/lib/python3.7/site-packages/apache_beam/runners/worker/sdk_worker.py", line 607, in do_instruction getattr(request, request_type), request.instruction_id) File "/venv/lib/python3.7/site-packages/apache_beam/runners/worker/sdk_worker.py", line 644, in process_bundle bundle_processor.process_bundle(instruction_id)) File "/venv/lib/python3.7/site-packages/apache_beam/runners/worker/bundle_processor.py", line 1000, in process_bundle element.data) File "/venv/lib/python3.7/site-packages/apache_beam/runners/worker/bundle_processor.py", line 228, in process_encoded self.output(decoded_value) File "apache_beam/runners/worker/operations.py", line 357, in apache_beam.runners.worker.operations.Operation.output File "apache_beam/runners/worker/operations.py", line 359, in apache_beam.runners.worker.operations.Operation.output File "apache_beam/runners/worker/operations.py", line 221, in apache_beam.runners.worker.operations.SingletonConsumerSet.receive File "apache_beam/runners/worker/operations.py", line 718, in apache_beam.runners.worker.operations.DoOperation.process File "apache_beam/runners/worker/operations.py", line 719, in apache_beam.runners.worker.operations.DoOperation.process File "apache_beam/runners/common.py", line 1241, in apache_beam.runners.common.DoFnRunner.process File "apache_beam/runners/common.py", line 1306, in apache_beam.runners.common.DoFnRunner._reraise_augmented File "apache_beam/runners/common.py", line 1239, in apache_beam.runners.common.DoFnRunner.process File "apache_beam/runners/common.py", line 587, in apache_beam.runners.common.SimpleInvoker.invoke_process File "apache_beam/runners/common.py", line 1401, in apache_beam.runners.common._OutputProcessor.process_outputs File "apache_beam/runners/worker/operations.py", line 221, in apache_beam.runners.worker.operations.SingletonConsumerSet.receive File "apache_beam/runners/worker/operations.py", line 718, in apache_beam.runners.worker.operations.DoOperation.process File "apache_beam/runners/worker/operations.py", line 719, in apache_beam.runners.worker.operations.DoOperation.process File "apache_beam/runners/common.py", line 1241, in apache_beam.runners.common.DoFnRunner.process File "apache_beam/runners/common.py", line 1321, in apache_beam.runners.common.DoFnRunner._reraise_augmented File "/venv/lib/python3.7/site-packages/future/utils/__init__.py", line 446, in raise_with_traceback raise exc.with_traceback(traceback) File "apache_beam/runners/common.py", line 1239, in apache_beam.runners.common.DoFnRunner.process File "apache_beam/runners/common.py", line 587, in apache_beam.runners.common.SimpleInvoker.invoke_process File "apache_beam/runners/common.py", line 1374, in apache_beam.runners.common._OutputProcessor.process_outputs File "/venv/lib/python3.7/site-packages/apache_beam/runners/worker/bundle_processor.py", line 1426, in process element) File "/venv/lib/python3.7/site-packages/apache_beam/io/iobase.py", line 1545, in initial_restriction range_tracker = element_source.get_range_tracker(None, None) File "/venv/lib/python3.7/site-packages/apache_beam/io/mongodbio.py", line 243, in get_range_tracker start_position, stop_position) File "/venv/lib/python3.7/site-packages/apache_beam/io/mongodbio.py", line 359, in _replace_none_positions stop_position = _ObjectIdHelper.increment_id(last_doc_id, 1) File "/venv/lib/python3.7/site-packages/apache_beam/io/mongodbio.py", line 418, in increment_id id_number = _ObjectIdHelper.id_to_int(object_id) File "/venv/lib/python3.7/site-packages/apache_beam/io/mongodbio.py", line 383, in id_to_int ints = struct.unpack('>III', id.binary) AttributeError: 'int' object has no attribute 'binary' [while running 'sources/Read Collection/Read/SDFBoundedSourceReader/ParDo(SDFBoundedSourceDoFn)/PairWithRestriction'] ERROR:root:mongo_to_bq_raw.py: 'int' object has no attribute 'binary' [while running 'sources/Read Collection/Read/SDFBoundedSourceReader/ParDo(SDFBoundedSourceDoFn)/PairWithRestriction']
String `_id` key:
Traceback (most recent call last): File "apache_beam/runners/common.py", line 1239, in apache_beam.runners.common.DoFnRunner.process File "apache_beam/runners/common.py", line 587, in apache_beam.runners.common.SimpleInvoker.invoke_process File "apache_beam/runners/common.py", line 1374, in apache_beam.runners.common._OutputProcessor.process_outputs File "/venv/lib/python3.7/site-packages/apache_beam/runners/worker/bundle_processor.py", line 1426, in process element) File "/venv/lib/python3.7/site-packages/apache_beam/io/iobase.py", line 1545, in initial_restriction range_tracker = element_source.get_range_tracker(None, None) File "/venv/lib/python3.7/site-packages/apache_beam/io/mongodbio.py", line 243, in get_range_tracker start_position, stop_position) File "/venv/lib/python3.7/site-packages/apache_beam/io/mongodbio.py", line 359, in _replace_none_positions stop_position = _ObjectIdHelper.increment_id(last_doc_id, 1) File "/venv/lib/python3.7/site-packages/apache_beam/io/mongodbio.py", line 418, in increment_id id_number = _ObjectIdHelper.id_to_int(object_id) File "/venv/lib/python3.7/site-packages/apache_beam/io/mongodbio.py", line 383, in id_to_int ints = struct.unpack('>III', id.binary) AttributeError: 'str' object has no attribute 'binary'During handling of the above exception, another exception occurred:Traceback (most recent call last): File "/data-pipelines/data_pipelines/mongo_to_bq_raw.py", line 325, in <module> sys.exit(run()) File "/data-pipelines/data_pipelines/mongo_to_bq_raw.py", line 240, in run options=options, ingestion_ts=ingestion_ts, table_name=table_name File "/venv/lib/python3.7/site-packages/apache_beam/pipeline.py", line 582, in __exit__ self.result = self.run() File "/venv/lib/python3.7/site-packages/apache_beam/pipeline.py", line 561, in run return self.runner.run_pipeline(self, self._options) File "/venv/lib/python3.7/site-packages/apache_beam/runners/direct/direct_runner.py", line 126, in run_pipeline return runner.run_pipeline(pipeline, options) File "/venv/lib/python3.7/site-packages/apache_beam/runners/portability/fn_api_runner/fn_runner.py", line 183, in run_pipeline pipeline.to_runner_api(default_environment=self._default_environment)) File "/venv/lib/python3.7/site-packages/apache_beam/runners/portability/fn_api_runner/fn_runner.py", line 193, in run_via_runner_api return self.run_stages(stage_context, stages) File "/venv/lib/python3.7/site-packages/apache_beam/runners/portability/fn_api_runner/fn_runner.py", line 360, in run_stages bundle_context_manager, File "/venv/lib/python3.7/site-packages/apache_beam/runners/portability/fn_api_runner/fn_runner.py", line 556, in _run_stage bundle_manager) File "/venv/lib/python3.7/site-packages/apache_beam/runners/portability/fn_api_runner/fn_runner.py", line 596, in _run_bundle data_input, data_output, input_timers, expected_timer_output) File "/venv/lib/python3.7/site-packages/apache_beam/runners/portability/fn_api_runner/fn_runner.py", line 897, in process_bundle result_future = self._worker_handler.control_conn.push(process_bundle_req) File "/venv/lib/python3.7/site-packages/apache_beam/runners/portability/fn_api_runner/worker_handlers.py", line 380, in push response = self.worker.do_instruction(request) File "/venv/lib/python3.7/site-packages/apache_beam/runners/worker/sdk_worker.py", line 607, in do_instruction getattr(request, request_type), request.instruction_id) File "/venv/lib/python3.7/site-packages/apache_beam/runners/worker/sdk_worker.py", line 644, in process_bundle bundle_processor.process_bundle(instruction_id)) File "/venv/lib/python3.7/site-packages/apache_beam/runners/worker/bundle_processor.py", line 1000, in process_bundle element.data) File "/venv/lib/python3.7/site-packages/apache_beam/runners/worker/bundle_processor.py", line 228, in process_encoded self.output(decoded_value) File "apache_beam/runners/worker/operations.py", line 357, in apache_beam.runners.worker.operations.Operation.output File "apache_beam/runners/worker/operations.py", line 359, in apache_beam.runners.worker.operations.Operation.output File "apache_beam/runners/worker/operations.py", line 221, in apache_beam.runners.worker.operations.SingletonConsumerSet.receive File "apache_beam/runners/worker/operations.py", line 718, in apache_beam.runners.worker.operations.DoOperation.process File "apache_beam/runners/worker/operations.py", line 719, in apache_beam.runners.worker.operations.DoOperation.process File "apache_beam/runners/common.py", line 1241, in apache_beam.runners.common.DoFnRunner.process File "apache_beam/runners/common.py", line 1306, in apache_beam.runners.common.DoFnRunner._reraise_augmented File "apache_beam/runners/common.py", line 1239, in apache_beam.runners.common.DoFnRunner.process File "apache_beam/runners/common.py", line 587, in apache_beam.runners.common.SimpleInvoker.invoke_process File "apache_beam/runners/common.py", line 1401, in apache_beam.runners.common._OutputProcessor.process_outputs File "apache_beam/runners/worker/operations.py", line 221, in apache_beam.runners.worker.operations.SingletonConsumerSet.receive File "apache_beam/runners/worker/operations.py", line 718, in apache_beam.runners.worker.operations.DoOperation.process File "apache_beam/runners/worker/operations.py", line 719, in apache_beam.runners.worker.operations.DoOperation.process File "apache_beam/runners/common.py", line 1241, in apache_beam.runners.common.DoFnRunner.process File "apache_beam/runners/common.py", line 1321, in apache_beam.runners.common.DoFnRunner._reraise_augmented File "/venv/lib/python3.7/site-packages/future/utils/__init__.py", line 446, in raise_with_traceback raise exc.with_traceback(traceback) File "apache_beam/runners/common.py", line 1239, in apache_beam.runners.common.DoFnRunner.process File "apache_beam/runners/common.py", line 587, in apache_beam.runners.common.SimpleInvoker.invoke_process File "apache_beam/runners/common.py", line 1374, in apache_beam.runners.common._OutputProcessor.process_outputs File "/venv/lib/python3.7/site-packages/apache_beam/runners/worker/bundle_processor.py", line 1426, in process element) File "/venv/lib/python3.7/site-packages/apache_beam/io/iobase.py", line 1545, in initial_restriction range_tracker = element_source.get_range_tracker(None, None) File "/venv/lib/python3.7/site-packages/apache_beam/io/mongodbio.py", line 243, in get_range_tracker start_position, stop_position) File "/venv/lib/python3.7/site-packages/apache_beam/io/mongodbio.py", line 359, in _replace_none_positions stop_position = _ObjectIdHelper.increment_id(last_doc_id, 1) File "/venv/lib/python3.7/site-packages/apache_beam/io/mongodbio.py", line 418, in increment_id id_number = _ObjectIdHelper.id_to_int(object_id) File "/venv/lib/python3.7/site-packages/apache_beam/io/mongodbio.py", line 383, in id_to_int ints = struct.unpack('>III', id.binary) AttributeError: 'str' object has no attribute 'binary' [while running 'tagged_objects/Read Collection/Read/SDFBoundedSourceReader/ParDo(SDFBoundedSourceDoFn)/PairWithRestriction'] ERROR:root:mongo_to_bq_raw.py: 'str' object has no attribute 'binary' [while running 'tagged_objects/Read Collection/Read/SDFBoundedSourceReader/ParDo(SDFBoundedSourceDoFn)/PairWithRestriction']
Attachments
Issue Links
- is cloned by
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BEAM-12120 Python IO MongoDB: integer and string `_id` keys are not supported
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- Resolved
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- Resolved
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BEAM-12119 Python IO MongoDB: integer and string `_id` keys are not supported
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- Resolved
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- links to
