Details
-
Bug
-
Status: Resolved
-
P1
-
Resolution: Cannot Reproduce
-
None
Description
The `test_FhirIO_exportFhirResourcesGcs` test has failed with OOMs several times recently. Examples,
Error:
Error Message org.apache.beam.sdk.Pipeline$PipelineExecutionException: java.lang.OutOfMemoryError: Java heap space Stacktrace org.apache.beam.sdk.Pipeline$PipelineExecutionException: java.lang.OutOfMemoryError: Java heap space at org.apache.beam.runners.direct.DirectRunner$DirectPipelineResult.waitUntilFinish(DirectRunner.java:353) at org.apache.beam.runners.direct.DirectRunner$DirectPipelineResult.waitUntilFinish(DirectRunner.java:321) at org.apache.beam.runners.direct.DirectRunner.run(DirectRunner.java:216) at org.apache.beam.runners.direct.DirectRunner.run(DirectRunner.java:67) at org.apache.beam.sdk.Pipeline.run(Pipeline.java:317) at org.apache.beam.sdk.testing.TestPipeline.run(TestPipeline.java:350) at org.apache.beam.sdk.testing.TestPipeline.run(TestPipeline.java:331) at org.apache.beam.sdk.io.gcp.healthcare.FhirIOLROIT.test_FhirIO_exportFhirResourcesGcs(FhirIOLROIT.java:91) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59) at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12) at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56) at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17) at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:26) at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:27) at org.apache.beam.sdk.testing.TestPipeline$1.evaluate(TestPipeline.java:319) at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:305) at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100) at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:365) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63) at org.junit.runners.ParentRunner$4.run(ParentRunner.java:330) at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:78) at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:328) at org.junit.runners.ParentRunner.access$100(ParentRunner.java:65) at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:292) at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:27) at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:305) at org.junit.runners.ParentRunner.run(ParentRunner.java:412) at org.gradle.api.internal.tasks.testing.junit.JUnitTestClassExecutor.runTestClass(JUnitTestClassExecutor.java:110) at org.gradle.api.internal.tasks.testing.junit.JUnitTestClassExecutor.execute(JUnitTestClassExecutor.java:58) at org.gradle.api.internal.tasks.testing.junit.JUnitTestClassExecutor.execute(JUnitTestClassExecutor.java:38) at org.gradle.api.internal.tasks.testing.junit.AbstractJUnitTestClassProcessor.processTestClass(AbstractJUnitTestClassProcessor.java:62) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.processTestClass(SuiteTestClassProcessor.java:51) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.processTestClass(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker.processTestClass(TestWorker.java:119) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.remote.internal.hub.MessageHubBackedObjectConnection$DispatchWrapper.dispatch(MessageHubBackedObjectConnection.java:182) at org.gradle.internal.remote.internal.hub.MessageHubBackedObjectConnection$DispatchWrapper.dispatch(MessageHubBackedObjectConnection.java:164) at org.gradle.internal.remote.internal.hub.MessageHub$Handler.run(MessageHub.java:414) at org.gradle.internal.concurrent.ExecutorPolicy$CatchAndRecordFailures.onExecute(ExecutorPolicy.java:64) at org.gradle.internal.concurrent.ManagedExecutorImpl$1.run(ManagedExecutorImpl.java:48) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:56) at java.lang.Thread.run(Thread.java:748) Caused by: java.lang.OutOfMemoryError: Java heap space at com.google.api.client.googleapis.media.MediaHttpUploader.buildContentChunk(MediaHttpUploader.java:608) at com.google.api.client.googleapis.media.MediaHttpUploader.resumableUpload(MediaHttpUploader.java:407) at com.google.api.client.googleapis.media.MediaHttpUploader.upload(MediaHttpUploader.java:335) at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:550) at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:474) at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:591) at com.google.cloud.hadoop.util.AbstractGoogleAsyncWriteChannel$UploadOperation.call(AbstractGoogleAsyncWriteChannel.java:107) Standard Error Sep 14, 2020 6:40:06 PM org.apache.beam.runners.dataflow.options.DataflowPipelineOptions$StagingLocationFactory create INFO: No stagingLocation provided, falling back to gcpTempLocation Sep 14, 2020 6:40:06 PM org.apache.beam.runners.dataflow.DataflowRunner fromOptions INFO: PipelineOptions.filesToStage was not specified. Defaulting to files from the classpath: will stage 183 files. Enable logging at DEBUG level to see which files will be staged. Sep 14, 2020 6:40:06 PM org.apache.beam.runners.d ...[truncated 129361 chars]... eJob logTerminalState INFO: Job 2020-09-14_11_40_11-3828548869464058478 finished with status DONE. Sep 14, 2020 6:44:01 PM org.apache.beam.runners.dataflow.TestDataflowRunner checkForPAssertSuccess INFO: Success result for Dataflow job 2020-09-14_11_40_11-3828548869464058478. Found 0 success, 0 failures out of 0 expected assertions. Sep 14, 2020 6:44:01 PM com.google.api.client.googleapis.services.AbstractGoogleClient <init> WARNING: Application name is not set. Call Builder#setApplicationName.
