[ARROW-7884] [C++][Python] Crash in pq.read_table() - ASF JIRA

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Type: Bug
Status: Resolved
Priority: Major
Resolution: Fixed
Affects Version/s: None
Fix Version/s: 0.17.0
Component/s: C++, Python
Labels:
- pull-request-available

External issue URL:
https://github.com/apache/arrow/issues/24109

Description

The following crashes:

>>> import pyarrow.parquet as pq                                                                                                                                        
>>> tab = pq.read_table("../cpp/submodules/parquet-testing/data/nation.dict-malformed.parquet")

Here is the backtrace:

#0  __GI_raise (sig=sig@entry=6) at ../sysdeps/unix/sysv/linux/raise.c:51
#1  0x00007ffff7805801 in __GI_abort () at abort.c:79
#2  0x00007fffb8a18e42 in arrow::util::CerrLog::~CerrLog (this=0x7fff84001690, __in_chrg=<optimized out>) at ../src/arrow/util/logging.cc:50
#3  0x00007fffb8a18e5e in arrow::util::CerrLog::~CerrLog (this=0x7fff84001690, __in_chrg=<optimized out>) at ../src/arrow/util/logging.cc:52
#4  0x00007fffb8a18c9f in arrow::util::ArrowLog::~ArrowLog (this=0x7fffaeffbf60, __in_chrg=<optimized out>) at ../src/arrow/util/logging.cc:228
#5  0x00007fffb89e1607 in arrow::io::internal::SharedExclusiveChecker::LockExclusive (this=0x555555db1338) at ../src/arrow/io/interfaces.cc:287
#6  0x00007fffb89b0b10 in arrow::io::internal::ExclusiveLockGuard<arrow::io::internal::SharedExclusiveChecker>::ExclusiveLockGuard (this=0x7fffaeffbff8, 
    lock=0x555555db1338) at ../src/arrow/io/concurrency.h:47
#7  0x00007fffb89ad20f in arrow::io::internal::SharedExclusiveChecker::exclusive_guard (this=0x555555db1338) at ../src/arrow/io/concurrency.h:74
#8  0x00007fffb89cb74b in arrow::io::internal::RandomAccessFileConcurrencyWrapper<arrow::io::ReadableFile>::GetSize (this=0x555555db1320)
    at ../src/arrow/io/concurrency.h:200
#9  0x00007fffb4ca61f3 in parquet::SerializedRowGroup::GetColumnPageReader (this=0x7fff840013e0, i=2) at ../src/parquet/file_reader.cc:117
#10 0x00007fffb4ca2b0e in parquet::RowGroupReader::GetColumnPageReader (this=0x7fff840014b0, i=2) at ../src/parquet/file_reader.cc:75
#11 0x00007fffb4b03296 in parquet::arrow::FileColumnIterator::NextChunk (this=0x7fff84000c10) at ../src/parquet/arrow/reader_internal.h:81
#12 0x00007fffb4b06ccc in parquet::arrow::LeafReader::NextRowGroup (this=0x7fff84000ef0) at ../src/parquet/arrow/reader.cc:452
#13 0x00007fffb4b0677e in parquet::arrow::LeafReader::LeafReader (this=0x7fff84000ef0, ctx=std::shared_ptr<parquet::arrow::ReaderContext> (empty) = {...}, 
    field=std::shared_ptr<arrow::Field> (empty) = {...}, input=std::unique_ptr<parquet::arrow::FileColumnIterator> = {...}) at ../src/parquet/arrow/reader.cc:407
#14 0x00007fffb4afbdac in parquet::arrow::GetReader (field=..., ctx=std::shared_ptr<parquet::arrow::ReaderContext> (use count 2, weak count 0) = {...}, 
    out=0x7fffaeffc580) at ../src/parquet/arrow/reader.cc:709
#15 0x00007fffb4b0425a in parquet::arrow::FileReaderImpl::GetFieldReader (this=0x555555dbf480, i=2, 
    included_leaves=std::shared_ptr<std::unordered_set<int, std::hash<int>, std::equal_to<int>, std::allocator<int> >> (use count 5, weak count 0) = {...}, 
    row_groups=std::vector of length 1, capacity 1 = {...}, out=0x7fffaeffc580) at ../src/parquet/arrow/reader.cc:173
#16 0x00007fffb4b04451 in parquet::arrow::FileReaderImpl::ReadSchemaField (this=0x555555dbf480, i=2, 
    included_leaves=std::shared_ptr<std::unordered_set<int, std::hash<int>, std::equal_to<int>, std::allocator<int> >> (use count 5, weak count 0) = {...}, 
    row_groups=std::vector of length 1, capacity 1 = {...}, out_field=0x555555dce870, out=0x555555dce790) at ../src/parquet/arrow/reader.cc:186
#17 0x00007fffb4afcf7f in parquet::arrow::FileReaderImpl::<lambda(int)>::operator()(int) const (__closure=0x555555dd4e08, i=2) at ../src/parquet/arrow/reader.cc:810
#18 0x00007fffb4b01151 in std::__invoke_impl<arrow::Status, parquet::arrow::FileReaderImpl::ReadRowGroups(const std::vector<int>&, const std::vector<int>&, std::shared_ptr<arrow::Table>*)::<lambda(int)>&, int&>(std::__invoke_other, parquet::arrow::FileReaderImpl::<lambda(int)> &, int &) (__f=..., __args#0=@0x555555dd4e38: 2)
    at /usr/include/c++/7/bits/invoke.h:60
#19 0x00007fffb4b010dc in std::__invoke<parquet::arrow::FileReaderImpl::ReadRowGroups(const std::vector<int>&, const std::vector<int>&, std::shared_ptr<arrow::Table>*)::<lambda(int)>&, int&>(parquet::arrow::FileReaderImpl::<lambda(int)> &, int &) (__fn=..., __args#0=@0x555555dd4e38: 2) at /usr/include/c++/7/bits/invoke.h:96
#20 0x00007fffb4b00fe1 in std::_Bind<parquet::arrow::FileReaderImpl::ReadRowGroups(const std::vector<int>&, const std::vector<int>&, std::shared_ptr<arrow::Table>*)::<lambda(int)>(int)>::__call<arrow::Status, 0>(std::tuple<> &&, std::_Index_tuple<0>) (this=0x555555dd4e08, __args=...) at /usr/include/c++/7/functional:469
#21 0x00007fffb4b00b0d in std::_Bind<parquet::arrow::FileReaderImpl::ReadRowGroups(const std::vector<int>&, const std::vector<int>&, std::shared_ptr<arrow::Table>*)::<lambda(int)>(int)>::operator()<>(void) (this=0x555555dd4e08) at /usr/include/c++/7/functional:551
#22 0x00007fffb4b00742 in std::__invoke_impl<arrow::Status, std::_Bind<parquet::arrow::FileReaderImpl::ReadRowGroups(const std::vector<int>&, const std::vector<int>&, std::shared_ptr<arrow::Table>*)::<lambda(int)>(int)>&>(std::__invoke_other, std::_Bind<parquet::arrow::FileReaderImpl::ReadRowGroups(const std::vector<int>&, const std::vector<int>&, std::shared_ptr<arrow::Table>*)::<lambda(int)>(int)> &) (__f=...) at /usr/include/c++/7/bits/invoke.h:60
#23 0x00007fffb4b004c5 in std::__invoke<std::_Bind<parquet::arrow::FileReaderImpl::ReadRowGroups(const std::vector<int>&, const std::vector<int>&, std::shared_ptr<arrow::Table>*)::<lambda(int)>(int)>&>(std::_Bind<parquet::arrow::FileReaderImpl::ReadRowGroups(const std::vector<int>&, const std::vector<int>&, std::shared_ptr<arrow::Table>*)::<lambda(int)>(int)> &) (__fn=...) at /usr/include/c++/7/bits/invoke.h:96
#24 0x00007fffb4b001bb in std::__future_base::_Task_state<std::_Bind<parquet::arrow::FileReaderImpl::ReadRowGroups(const std::vector<int>&, const std::vector<int>&, std::shared_ptr<arrow::Table>*)::<lambda(int)>(int)>, std::allocator<int>, arrow::Status()>::<lambda()>::operator()(void) const (__closure=0x7fffaeffcc28)
    at /usr/include/c++/7/future:1421
#25 0x00007fffb4b00bf9 in std::__future_base::_Task_setter<std::unique_ptr<std::__future_base::_Result<arrow::Status>, std::__future_base::_Result_base::_Deleter>, std::__future_base::_Task_state<_Fn, _Alloc, _Res(_Args ...)>::_M_run(_Args&& ...) [with _Fn = std::_Bind<parquet::arrow::FileReaderImpl::ReadRowGroups(const std::vector<int>&, const std::vector<int>&, std::shared_ptr<arrow::Table>*)::<lambda(int)>(int)>; _Alloc = std::allocator<int>; _Res = arrow::Status; _Args = {}]::<lambda()>, arrow::Status>::operator()(void) const (this=0x7fffaeffcc30) at /usr/include/c++/7/future:1339
#26 0x00007fffb4b0080a in std::_Function_handler<std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter>(), std::__future_base::_Task_setter<std::unique_ptr<std::__future_base::_Result<arrow::Status>, std::__future_base::_Result_base::_Deleter>, std::__future_base::_Task_state<_Fn, _Alloc, _Res(_Args ...)>::_M_run(_Args&& ...) [with _Fn = std::_Bind<parquet::arrow::FileReaderImpl::ReadRowGroups(const std::vector<int>&, const std::vector<int>&, std::shared_ptr<arrow::Table>*)::<lambda(int)>(int)>; _Alloc = std::allocator<int>; _Res = arrow::Status; _Args = {}]::<lambda()>, arrow::Status> >::_M_invoke(const std::_Any_data &) (
    __functor=...) at /usr/include/c++/7/bits/std_function.h:302
#27 0x00007fffb4b0861e in std::function<std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter> ()>::operator()() const (
    this=0x7fffaeffcc30) at /usr/include/c++/7/bits/std_function.h:706
#28 0x00007fffb4b028e6 in std::__future_base::_State_baseV2::_M_do_set(std::function<std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter> ()>*, bool*) (this=0x555555dd4de0, __f=0x7fffaeffcc30, __did_set=0x7fffaeffcb9f) at /usr/include/c++/7/future:561
#29 0x00007fffb4b126c5 in std::__invoke_impl<void, void (std::__future_base::_State_baseV2::*)(std::function<std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter> ()>*, bool*), std::__future_base::_State_baseV2*, std::function<std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter> ()>*, bool*>(std::__invoke_memfun_deref, void (std::__future_base::_State_baseV2::*&&)(std::function<std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter> ()>*, bool*), std::__future_base::_State_baseV2*&&, std::function<std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter> ()>*&&, bool*&&) (__f=
    @0x7fffaeffcbe0: (void (std::__future_base::_State_baseV2::*)(std::__future_base::_State_baseV2 * const, std::function<std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter>()> *, bool *)) 0x7fffb4b028b0 <std::__future_base::_State_baseV2::_M_do_set(std::function<std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter> ()>*, bool*)>, __t=@0x7fffaeffcbb0: 0x555555dd4de0, __args#0=@0x7fffaeffcbb8: 0x7fffaeffcc30, 
---Type <return> to continue, or q <return> to quit---
    __args#1=@0x7fffaeffcbc0: 0x7fffaeffcb9f) at /usr/include/c++/7/bits/invoke.h:73
#30 0x00007fffb4b0c9f2 in std::__invoke<void (std::__future_base::_State_baseV2::*)(std::function<std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter> ()>*, bool*), std::__future_base::_State_baseV2*, std::function<std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter> ()>*, bool*>(void (std::__future_base::_State_baseV2::*&&)(std::function<std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter> ()>*, bool*), std::__future_base::_State_baseV2*&&, std::function<std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter> ()>*&&, bool*&&) (__fn=
    @0x7fffaeffcbe0: (void (std::__future_base::_State_baseV2::*)(std::__future_base::_State_baseV2 * const, std::function<std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter>()> *, bool *)) 0x7fffb4b028b0 <std::__future_base::_State_baseV2::_M_do_set(std::function<std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter> ()>*, bool*)>, __args#0=@0x7fffaeffcbb0: 0x555555dd4de0, __args#1=@0x7fffaeffcbb8: 0x7fffaeffcc30, 
    __args#2=@0x7fffaeffcbc0: 0x7fffaeffcb9f) at /usr/include/c++/7/bits/invoke.h:95
#31 0x00007fffb4b0819e in void std::call_once<void (std::__future_base::_State_baseV2::*)(std::function<std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter> ()>*, bool*), std::__future_base::_State_baseV2*, std::function<std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter> ()>*, bool*>(std::once_flag&, void (std::__future_base::_State_baseV2::*&&)(std::function<std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter> ()>*, bool*), std::__future_base::_State_baseV2*&&, std::function<std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter> ()>*&&, bool*&&)::{lambda()#1}::operator()() const (__closure=0x7fffaeffcb20) at /usr/include/c++/7/mutex:672
#32 0x00007fffb4b08209 in void std::call_once<void (std::__future_base::_State_baseV2::*)(std::function<std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter> ()>*, bool*), std::__future_base::_State_baseV2*, std::function<std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter> ()>*, bool*>(std::once_flag&, void (std::__future_base::_State_baseV2::*&&)(std::function<std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter> ()>*, bool*), std::__future_base::_State_baseV2*&&, std::function<std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter> ()>*&&, bool*&&)::{lambda()#2}::operator()() const (__closure=0x0) at /usr/include/c++/7/mutex:677
#33 0x00007fffb4b0821a in void std::call_once<void (std::__future_base::_State_baseV2::*)(std::function<std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter> ()>*, bool*), std::__future_base::_State_baseV2*, std::function<std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter> ()>*, bool*>(std::once_flag&, void (std::__future_base::_State_baseV2::*&&)(std::function<std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter> ()>*, bool*), std::__future_base::_State_baseV2*&&, std::function<std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter> ()>*&&, bool*&&)::{lambda()#2}::_FUN() () at /usr/include/c++/7/mutex:677
#34 0x00007ffff7bc5827 in __pthread_once_slow (once_control=0x555555dd4df8, init_routine=0x7fffb6d52782 <std::__once_proxy()>) at pthread_once.c:116
#35 0x00007fffb4afa2fa in __gthread_once (__once=0x555555dd4df8, __func=0x7fffb6d52782 <std::__once_proxy()>)
    at /usr/include/x86_64-linux-gnu/c++/7/bits/gthr-default.h:699
#36 0x00007fffb4b082d3 in std::call_once<void (std::__future_base::_State_baseV2::*)(std::function<std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter> ()>*, bool*), std::__future_base::_State_baseV2*, std::function<std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter> ()>*, bool*>(std::once_flag&, void (std::__future_base::_State_baseV2::*&&)(std::function<std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter> ()>*, bool*), std::__future_base::_State_baseV2*&&, std::function<std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter> ()>*&&, bool*&&) (__once=..., __f=
    @0x7fffaeffcbe0: (void (std::__future_base::_State_baseV2::*)(std::__future_base::_State_baseV2 * const, std::function<std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter>()> *, bool *)) 0x7fffb4b028b0 <std::__future_base::_State_baseV2::_M_do_set(std::function<std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter> ()>*, bool*)>, __args#0=@0x7fffaeffcbb0: 0x555555dd4de0, __args#1=@0x7fffaeffcbb8: 0x7fffaeffcc30, 
    __args#2=@0x7fffaeffcbc0: 0x7fffaeffcb9f) at /usr/include/c++/7/mutex:684
#37 0x00007fffb4b02488 in std::__future_base::_State_baseV2::_M_set_result(std::function<std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter> ()>, bool) (this=0x555555dd4de0, __res=..., __ignore_failure=false) at /usr/include/c++/7/future:401
#38 0x00007fffb4b00241 in std::__future_base::_Task_state<std::_Bind<parquet::arrow::FileReaderImpl::ReadRowGroups(const std::vector<int>&, const std::vector<int>&, std::shared_ptr<arrow::Table>*)::<lambda(int)>(int)>, std::allocator<int>, arrow::Status()>::_M_run(void) (this=0x555555dd4de0) at /usr/include/c++/7/future:1423
#39 0x00007fffb708834d in std::packaged_task<arrow::Status ()>::operator()() (this=0x555555dd4e90) at /usr/include/c++/7/future:1556
#40 0x00007fffb7080078 in arrow::internal::detail::packaged_task_wrapper<arrow::Status>::operator() (this=0x555555dd4eb0) at ../src/arrow/util/thread_pool.h:70
#41 0x00007fffb4b15d78 in std::_Function_handler<void (), arrow::internal::detail::packaged_task_wrapper<arrow::Status> >::_M_invoke(std::_Any_data const&) (
    __functor=...) at /usr/include/c++/7/bits/std_function.h:316
#42 0x00007fffb8a2c73e in std::function<void ()>::operator()() const (this=0x7fffaeffcd50) at /usr/include/c++/7/bits/std_function.h:706
#43 0x00007fffb8a2a644 in arrow::internal::WorkerLoop (state=std::shared_ptr<arrow::internal::ThreadPool::State> (use count 49, weak count 0) = {...}, it={
  _M_id = {
    _M_thread = 140736129390336
  }
}) at ../src/arrow/util/thread_pool.cc:88
#44 0x00007fffb8a2b032 in arrow::internal::ThreadPool::<lambda()>::operator()(void) const (__closure=0x555555dd2578) at ../src/arrow/util/thread_pool.cc:225
#45 0x00007fffb8a2bc93 in std::__invoke_impl<void, arrow::internal::ThreadPool::LaunchWorkersUnlocked(int)::<lambda()> >(std::__invoke_other, arrow::internal::ThreadPool::<lambda()> &&) (__f=...) at /usr/include/c++/7/bits/invoke.h:60
#46 0x00007fffb8a2b9d4 in std::__invoke<arrow::internal::ThreadPool::LaunchWorkersUnlocked(int)::<lambda()> >(arrow::internal::ThreadPool::<lambda()> &&) (__fn=...)
    at /usr/include/c++/7/bits/invoke.h:95
#47 0x00007fffb8a2bec6 in std::thread::_Invoker<std::tuple<arrow::internal::ThreadPool::LaunchWorkersUnlocked(int)::<lambda()> > >::_M_invoke<0>(std::_Index_tuple<0>)
    (this=0x555555dd2578) at /usr/include/c++/7/thread:234
#48 0x00007fffb8a2be82 in std::thread::_Invoker<std::tuple<arrow::internal::ThreadPool::LaunchWorkersUnlocked(int)::<lambda()> > >::operator()(void) (
    this=0x555555dd2578) at /usr/include/c++/7/thread:243
#49 0x00007fffb8a2be52 in std::thread::_State_impl<std::thread::_Invoker<std::tuple<arrow::internal::ThreadPool::LaunchWorkersUnlocked(int)::<lambda()> > > >::_M_run(void) (this=0x555555dd2570) at /usr/include/c++/7/thread:186
#50 0x00007fffb6d53163 in std::execute_native_thread_routine (__p=0x555555dd2570)
    at /home/conda/feedstock_root/build_artifacts/ctng-compilers_1578638331887/work/.build/x86_64-conda_cos6-linux-gnu/src/gcc/libstdc++-v3/src/c++11/thread.cc:80
#51 0x00007ffff7bbd6db in start_thread (arg=0x7fffaeffd700) at pthread_create.c:463
---Type <return> to continue, or q <return> to quit---
#52 0x00007ffff78e688f in clone () at ../sysdeps/unix/sysv/linux/x86_64/clone.S:95

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GitHub Pull Request #6453

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Assignee:: Antoine Pitrou

Reporter:: Antoine Pitrou

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Watchers:: 4 Start watching this issue

Dates

Created:: 19/Feb/20 10:14

Updated:: 11/Jan/23 07:56

Resolved:: 20/Feb/20 14:37

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