[ARROW-5874] [Python] pyarrow 0.14.0 macOS wheels depend on shared libs under /usr/local/opt

• Type: Bug
• Status: Resolved
• Priority: Critical
• Resolution: Fixed
• Affects Version/s: 0.14.0
• Fix Version/s: 0.14.1, 0.15.0
• Component/s: Python
• Labels: pull-request-available pyarrow wheel
• Environment: macOS 10.14.5 ; Anaconda Python 3.7.3
• External issue URL: https://github.com/apache/arrow/issues/22289
• Assignee: Krisztian Szucs
• Reporter: Michael Anselmi
• Created: 08/Jul/19 12:09
• Updated: 11/Jan/23 07:43
• Resolved: 08/Jul/19 17:51

Description

Hello, and congrats on the recent release of Apache Arrow 0.14.0!

This morning I installed pyarrow 0.14.0 on my macOS 10.14.5 system like so:

python3.7 -m venv ~/virtualenv/pyarrow-0.14.0
source ~/virtualenv/pyarrow-0.14.0/bin/activate
pip install --upgrade pip setuptools
pip install pyarrow  # installs pyarrow-0.14.0-cp37-cp37m-macosx_10_6_intel.whl

pip freeze --all
# numpy==1.16.4
# pip==19.1.1
# pyarrow==0.14.0
# setuptools==41.0.1
# six==1.12.0

However I am unable to import pyarrow:

python -c 'import pyarrow'
# Traceback (most recent call last):
#   File "<string>", line 1, in <module>
#   File "/Users/manselmi/virtualenv/pyarrow-0.14.0/lib/python3.7/site-packages/pyarrow/__init__.py", line 49, in <module>
#     from pyarrow.lib import cpu_count, set_cpu_count
# ImportError: dlopen(/Users/manselmi/virtualenv/pyarrow-0.14.0/lib/python3.7/site-packages/pyarrow/lib.cpython-37m-darwin.so, 2): Library not loaded: /usr/local/opt/openssl/lib/libcrypto.1.0.0.dylib
#   Referenced from: /Users/manselmi/virtualenv/pyarrow-0.14.0/lib/python3.7/site-packages/pyarrow/libarrow.14.dylib
#   Reason: image not found

pyarrow is trying to load a shared library (OpenSSL in this case) from a path under /usr/local/opt that doesn't exist; perhaps that OpenSSL had been provided by Homebrew as part of your build process?  Unfortunately this makes the pyarrow 0.14.0 wheel completely unusable on my system or any system that doesn't have OpenSSL installed in that location.  This is a regression from pyarrow 0.13.0 as those wheels "just worked".

Additional diagnostic output below.  I ran otool -L on each .dylib and .so file in /Users/manselmi/virtualenv/pyarrow-0.14.0/lib/python3.7/site-packages/pyarrow and included the output for those with dependencies under /usr/local/opt:

otool -L /Users/manselmi/virtualenv/pyarrow-0.14.0/lib/python3.7/site-packages/pyarrow/libarrow.14.dylib
# /Users/manselmi/virtualenv/pyarrow-0.14.0/lib/python3.7/site-packages/pyarrow/libarrow.14.dylib:
#         @rpath/libarrow.14.dylib (compatibility version 14.0.0, current version 14.0.0)
#         /usr/local/opt/openssl/lib/libcrypto.1.0.0.dylib (compatibility version 1.0.0, current version 1.0.0)
#         /usr/local/opt/openssl/lib/libssl.1.0.0.dylib (compatibility version 1.0.0, current version 1.0.0)
#         /usr/lib/libz.1.dylib (compatibility version 1.0.0, current version 1.2.8)
#         @rpath/libarrow_boost_system.dylib (compatibility version 0.0.0, current version 0.0.0)
#         @rpath/libarrow_boost_filesystem.dylib (compatibility version 0.0.0, current version 0.0.0)
#         @rpath/libarrow_boost_regex.dylib (compatibility version 0.0.0, current version 0.0.0)
#         /usr/lib/libc++.1.dylib (compatibility version 1.0.0, current version 307.5.0)
#         /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1238.50.2)


otool -L /Users/manselmi/virtualenv/pyarrow-0.14.0/lib/python3.7/site-packages/pyarrow/libarrow_flight.14.dylib
# /Users/manselmi/virtualenv/pyarrow-0.14.0/lib/python3.7/site-packages/pyarrow/libarrow_flight.14.dylib:
#         @rpath/libarrow_flight.14.dylib (compatibility version 14.0.0, current version 14.0.0)
#         @rpath/libarrow.14.dylib (compatibility version 14.0.0, current version 14.0.0)
#         /usr/local/opt/openssl/lib/libssl.1.0.0.dylib (compatibility version 1.0.0, current version 1.0.0)
#         /usr/local/opt/openssl/lib/libcrypto.1.0.0.dylib (compatibility version 1.0.0, current version 1.0.0)
#         /usr/lib/libc++.1.dylib (compatibility version 1.0.0, current version 307.5.0)
#         /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1238.50.2)

otool -L /Users/manselmi/virtualenv/pyarrow-0.14.0/lib/python3.7/site-packages/pyarrow/libarrow_python.14.dylib
# /Users/manselmi/virtualenv/pyarrow-0.14.0/lib/python3.7/site-packages/pyarrow/libarrow_python.14.dylib:
#         @rpath/libarrow_python.14.dylib (compatibility version 14.0.0, current version 14.0.0)
#         /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1238.50.2)
#         /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation (compatibility version 150.0.0, current version 1349.64.0)
#         @rpath/libarrow_flight.14.dylib (compatibility version 14.0.0, current version 14.0.0)
#         @rpath/libarrow.14.dylib (compatibility version 14.0.0, current version 14.0.0)
#         /usr/local/opt/openssl/lib/libssl.1.0.0.dylib (compatibility version 1.0.0, current version 1.0.0)
#         /usr/local/opt/openssl/lib/libcrypto.1.0.0.dylib (compatibility version 1.0.0, current version 1.0.0)
#         /usr/lib/libc++.1.dylib (compatibility version 1.0.0, current version 307.5.0)

otool -L /Users/manselmi/virtualenv/pyarrow-0.14.0/lib/python3.7/site-packages/pyarrow/libgandiva.14.dylib
# /Users/manselmi/virtualenv/pyarrow-0.14.0/lib/python3.7/site-packages/pyarrow/libgandiva.14.dylib:
#         @rpath/libgandiva.14.dylib (compatibility version 14.0.0, current version 14.0.0)
#         @rpath/libarrow.14.dylib (compatibility version 14.0.0, current version 14.0.0)
#         /usr/local/opt/openssl/lib/libssl.1.0.0.dylib (compatibility version 1.0.0, current version 1.0.0)
#         /usr/local/opt/openssl/lib/libcrypto.1.0.0.dylib (compatibility version 1.0.0, current version 1.0.0)
#         /usr/lib/libz.1.dylib (compatibility version 1.0.0, current version 1.2.8)
#         /usr/lib/libncurses.5.4.dylib (compatibility version 5.4.0, current version 5.4.0)
#         /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1238.50.2)
#         /usr/lib/libc++.1.dylib (compatibility version 1.0.0, current version 307.5.0)

otool -L /Users/manselmi/virtualenv/pyarrow-0.14.0/lib/python3.7/site-packages/pyarrow/libplasma.14.dylib
# /Users/manselmi/virtualenv/pyarrow-0.14.0/lib/python3.7/site-packages/pyarrow/libplasma.14.dylib:
#         @rpath/libplasma.14.dylib (compatibility version 14.0.0, current version 14.0.0)
#         @rpath/libarrow.14.dylib (compatibility version 14.0.0, current version 14.0.0)
#         /usr/local/opt/openssl/lib/libssl.1.0.0.dylib (compatibility version 1.0.0, current version 1.0.0)
#         /usr/local/opt/openssl/lib/libcrypto.1.0.0.dylib (compatibility version 1.0.0, current version 1.0.0)
#         /usr/lib/libc++.1.dylib (compatibility version 1.0.0, current version 307.5.0)
#         /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1238.50.2)

Issue Links

• links to: GitHub Pull Request #4823