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  1. Apache Arrow
  2. ARROW-5231

[Java] Arrow Java can't read union vector from ArrowStreamReader written by its own bugs

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Details

    • Bug
    • Status: Open
    • Major
    • Resolution: Unresolved
    • None
    • None
    • Java
    • None
    • Mac OS 10.13.6, Arrow 0.13.0, JDK8

    Description

      When writing union data using  ArrowStreamWriter in java, I can't read it back using ArrowStreamReader in java. The exception is:

      Exception in thread "main" java.lang.IllegalArgumentException: not all nodes and buffers were consumed. nodes: [ArrowFieldNode [length=100, nullCount=0]] buffers: [ArrowBuf[14], udle: [7 104..117], ArrowBuf[15], udle: [7 120..520]]
      at org.apache.arrow.vector.VectorLoader.load(VectorLoader.java:64)
      at org.apache.arrow.vector.ipc.ArrowReader.loadRecordBatch(ArrowReader.java:219)
      at org.apache.arrow.vector.ipc.ArrowStreamReader.loadNextBatch(ArrowStreamReader.java:121)

      The code to reproduce this exception is:

       

      import org.apache.arrow.memory.RootAllocator;
      import org.apache.arrow.vector.FieldVector;
      import org.apache.arrow.vector.VectorSchemaRoot;
      import org.apache.arrow.vector.complex.UnionVector;
      import org.apache.arrow.vector.dictionary.DictionaryProvider;
      import org.apache.arrow.vector.holders.NullableIntHolder;
      import org.apache.arrow.vector.ipc.ArrowStreamReader;
      import org.apache.arrow.vector.ipc.ArrowStreamWriter;
      import org.apache.arrow.vector.types.UnionMode;
      import org.apache.arrow.vector.types.pojo.ArrowType;
      import org.apache.arrow.vector.types.pojo.Field;
      import org.apache.arrow.vector.types.pojo.FieldType;
      import org.apache.arrow.vector.types.pojo.Schema;
      
      import java.io.ByteArrayInputStream;
      import java.io.FileOutputStream;
      import java.io.IOException;
      import java.io.OutputStream;
      import java.nio.file.Files;
      import java.nio.file.Paths;
      import java.util.Collections;
      import java.util.List;
      
      public class UnionTest {
      
          public static void writeUnionBatch(OutputStream os) throws IOException {
              int[] typeIds = new int[]{ArrowType.ArrowTypeID.Int.ordinal()};
              ArrowType.Union union = new ArrowType.Union(UnionMode.Sparse, typeIds);
              List<Field> childList = Collections.singletonList(
              new Field("s1", FieldType.nullable(new ArrowType.Int(32, true)), null)
      );
              Field field = new Field("f1", FieldType.nullable(union), childList);
              List<Field> fields = Collections.singletonList(field);
              Schema schema = new Schema(fields);
              VectorSchemaRoot root = VectorSchemaRoot.create(schema, new RootAllocator(Integer.MAX_VALUE));
              DictionaryProvider.MapDictionaryProvider provider = new DictionaryProvider.MapDictionaryProvider();
              ArrowStreamWriter writer = new ArrowStreamWriter(root, provider, os);
              writer.start();
              for (int i = 0; i < 2; i++) {
                  root.setRowCount(100);
                  List<FieldVector> vectors = root.getFieldVectors();
                  UnionVector vector = (UnionVector) vectors.get(0);
                  fillVector(vector, 100);
                  for (int j = 0; j < 100; j++) {
                      if (!vector.isNull(j)) {
                          System.out.println(vector.getObject(j));
                      }
                  }
                  writer.writeBatch();
              }
              writer.end();
              writer.close();
          }
      
          private static void fillVector(UnionVector vector, int batchSize) {
              vector.setInitialCapacity(batchSize);
              vector.allocateNew();
              for (int i = 0; i < batchSize; i++) {
                  NullableIntHolder intHolder = new NullableIntHolder();
                  intHolder.isSet = 1;
                  intHolder.value = i;
                  vector.setSafe(i, intHolder);
              }
              vector.setValueCount(batchSize);
          }
      
      
          public static void main(String[] args) throws IOException {
              try(FileOutputStream fos = new FileOutputStream("result/union.arrow")) {
                  writeUnionBatch(fos);
                  System.out.println("write succeed");
                  fos.flush();
              }
      
              RootAllocator allocator = new RootAllocator(1000000000);
              ByteArrayInputStream in = new ByteArrayInputStream(Files.readAllBytes(Paths.get("result/union.arrow")));
              ArrowStreamReader reader = new ArrowStreamReader(in, allocator);
              reader.loadNextBatch();
          }
      }
      
      

      And it can't read union data generated by python, as is reported in https://issues.apache.org/jira/browse/ARROW-1692

      It seems strange arrow java can't read union data generated by its own. Is there any format gap between arrow java UnionVector write and read?

       

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            Unassigned Unassigned
            Chaokun Yang Shawn Yang
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            Dates

              Created:
              Updated: