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  1. Apache Arrow
  2. ARROW-4995

[R] Make sure winbuilder tests pass for package

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Details

    • Improvement
    • Status: Resolved
    • Major
    • Resolution: Fixed
    • 0.13.0
    • 0.13.0
    • R

    Description

      Current submission to winbuilder triggers the following errors:

      * using log directory 'd:/RCompile/CRANguest/R-release/arrow.Rcheck'
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'arrow/DESCRIPTION' ... OK
* this is package 'arrow' version '0.12.0.9000'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Javier Luraschi <javier@rstudio.com>'

New submission

Version contains large components (0.12.0.9000)
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .travis.yml
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.

CRAN-pack does not know about
  .travis.yml
* checking for portable file names ... OK
* checking whether package 'arrow' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  8.6Mb
  sub-directories of 1Mb or more:
    R      1.9Mb
    libs   6.5Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
Non-standard file/directory found at top level:
  'clang_format.sh'
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
** checking use of S3 registration ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
** checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [8s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compiled code ... OK
* checking examples ...
** running examples for arch 'i386' ... [1s] OK
** running examples for arch 'x64' ... [1s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ... [7s] ERROR
  Running 'testthat.R' [6s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > # Licensed to the Apache Software Foundation (ASF) under one
  > # or more contributor license agreements.  See the NOTICE file
  > # distributed with this work for additional information
  > # regarding copyright ownership.  The ASF licenses this file
  > # to you under the Apache License, Version 2.0 (the
  > # "License"); you may not use this file except in compliance
  > # with the License.  You may obtain a copy of the License at
  > #
  > #   http://www.apache.org/licenses/LICENSE-2.0
  > #
  > # Unless required by applicable law or agreed to in writing,
  > # software distributed under the License is distributed on an
  > # "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
  > # KIND, either express or implied.  See the License for the
  > # specific language governing permissions and limitations
  > # under the License.
  > 
  > library(testthat)
  > library(arrow)
  
  Attaching package: 'arrow'
  
  The following object is masked from 'package:utils':
  
      timestamp
  
  The following objects are masked from 'package:base':
  
      array, table
  
  > library(tibble)
  > 
  > test_check("arrow")
  -- 1. Error: read_table handles various input streams (ARROW-3450, ARROW-3505) (
  could not find function "defer"
  1: local_tempfile() at testthat/test-Table.R:28
  2: defer_parent(unlink(tf), ...)
  3: eval(substitute(defer(expr, envir, priority), list(expr = substitute(expr), envir = parent.frame(2), 
         priority = priority)), envir = parent.frame())
  4: eval(substitute(defer(expr, envir, priority), list(expr = substitute(expr), envir = parent.frame(2), 
         priority = priority)), envir = parent.frame())
  
  -- 2. Error: Can read csv file (@test-arrow-csv-.R#21)  ------------------------
  could not find function "defer"
  1: local_tempfile() at testthat/test-arrow-csv-.R:21
  2: defer_parent(unlink(tf), ...)
  3: eval(substitute(defer(expr, envir, priority), list(expr = substitute(expr), envir = parent.frame(2), 
         priority = priority)), envir = parent.frame())
  4: eval(substitute(defer(expr, envir, priority), list(expr = substitute(expr), envir = parent.frame(2), 
         priority = priority)), envir = parent.frame())
  
  -- 3. Error: feather read/write round trip (@test-feather.R#23)  ---------------
  could not find function "defer"
  1: local_tempfile() at testthat/test-feather.R:23
  2: defer_parent(unlink(tf), ...)
  3: eval(substitute(defer(expr, envir, priority), list(expr = substitute(expr), envir = parent.frame(2), 
         priority = priority)), envir = parent.frame())
  4: eval(substitute(defer(expr, envir, priority), list(expr = substitute(expr), envir = parent.frame(2), 
         priority = priority)), envir = parent.frame())
  
  -- 4. Error: feather handles columns = <names> (@test-feather.R#63)  -----------
  could not find function "defer"
  1: local_tempfile() at testthat/test-feather.R:63
  2: defer_parent(unlink(tf), ...)
  3: eval(substitute(defer(expr, envir, priority), list(expr = substitute(expr), envir = parent.frame(2), 
         priority = priority)), envir = parent.frame())
  4: eval(substitute(defer(expr, envir, priority), list(expr = substitute(expr), envir = parent.frame(2), 
         priority = priority)), envir = parent.frame())
  
  -- 5. Error: feather handles columns = <integer> (@test-feather.R#76)  ---------
  could not find function "defer"
  1: local_tempfile() at testthat/test-feather.R:76
  2: defer_parent(unlink(tf), ...)
  3: eval(substitute(defer(expr, envir, priority), list(expr = substitute(expr), envir = parent.frame(2), 
         priority = priority)), envir = parent.frame())
  4: eval(substitute(defer(expr, envir, priority), list(expr = substitute(expr), envir = parent.frame(2), 
         priority = priority)), envir = parent.frame())
  
  -- 6. Error: feather read/write round trip (@test-feather.R#89)  ---------------
  could not find function "defer"
  1: local_tempfile() at testthat/test-feather.R:89
  2: defer_parent(unlink(tf), ...)
  3: eval(substitute(defer(expr, envir, priority), list(expr = substitute(expr), envir = parent.frame(2), 
         priority = priority)), envir = parent.frame())
  4: eval(substitute(defer(expr, envir, priority), list(expr = substitute(expr), envir = parent.frame(2), 
         priority = priority)), envir = parent.frame())
  
  -- 7. Error: arrow::table round trip (@test-read-write.R#87)  ------------------
  could not find function "defer"
  1: local_tempfile() at testthat/test-read-write.R:87
  2: defer_parent(unlink(tf), ...)
  3: eval(substitute(defer(expr, envir, priority), list(expr = substitute(expr), envir = parent.frame(2), 
         priority = priority)), envir = parent.frame())
  4: eval(substitute(defer(expr, envir, priority), list(expr = substitute(expr), envir = parent.frame(2), 
         priority = priority)), envir = parent.frame())
  
  -- 8. Error: arrow::table round trip handles NA in integer and numeric (@test-re
  could not find function "defer"
  1: local_tempfile() at testthat/test-read-write.R:117
  2: defer_parent(unlink(tf), ...)
  3: eval(substitute(defer(expr, envir, priority), list(expr = substitute(expr), envir = parent.frame(2), 
         priority = priority)), envir = parent.frame())
  4: eval(substitute(defer(expr, envir, priority), list(expr = substitute(expr), envir = parent.frame(2), 
         priority = priority)), envir = parent.frame())
  
  -- 9. Error: RecordBatchFileWriter / RecordBatchFileReader roundtrips (@test-rea
  could not find function "defer"
  1: local_tempfile() at testthat/test-read_record_batch.R:26
  2: defer_parent(unlink(tf), ...)
  3: eval(substitute(defer(expr, envir, priority), list(expr = substitute(expr), envir = parent.frame(2), 
         priority = priority)), envir = parent.frame())
  4: eval(substitute(defer(expr, envir, priority), list(expr = substitute(expr), envir = parent.frame(2), 
         priority = priority)), envir = parent.frame())
  
  -- 10. Error: read_record_batch() handles (raw|Buffer|InputStream, Schema) (ARRO
  could not find function "defer"
  1: read_record_batch(raw, schema) at testthat/test-read_record_batch.R:54
  2: read_record_batch.raw(raw, schema)
  3: close_on_exit(BufferReader(obj))
  4: defer_parent(x$close(), ...)
  5: eval(substitute(defer(expr, envir, priority), list(expr = substitute(expr), envir = parent.frame(2), 
         priority = priority)), envir = parent.frame())
  6: eval(substitute(defer(expr, envir, priority), list(expr = substitute(expr), envir = parent.frame(2), 
         priority = priority)), envir = parent.frame())
  
  -- 11. Error: read_record_batch() can handle (Message, Schema) parameters (ARROW
  could not find function "defer"
  1: close_on_exit(BufferReader(raw)) at testthat/test-read_record_batch.R:68
  2: defer_parent(x$close(), ...)
  3: eval(substitute(defer(expr, envir, priority), list(expr = substitute(expr), envir = parent.frame(2), 
         priority = priority)), envir = parent.frame())
  4: eval(substitute(defer(expr, envir, priority), list(expr = substitute(expr), envir = parent.frame(2), 
         priority = priority)), envir = parent.frame())
  
  == testthat results  ===========================================================
  OK: 723 SKIPPED: 2 FAILED: 11
  1. Error: read_table handles various input streams (ARROW-3450, ARROW-3505) (@test-Table.R#28) 
  2. Error: Can read csv file (@test-arrow-csv-.R#21) 
  3. Error: feather read/write round trip (@test-feather.R#23) 
  4. Error: feather handles columns = <names> (@test-feather.R#63) 
  5. Error: feather handles columns = <integer> (@test-feather.R#76) 
  6. Error: feather read/write round trip (@test-feather.R#89) 
  7. Error: arrow::table round trip (@test-read-write.R#87) 
  8. Error: arrow::table round trip handles NA in integer and numeric (@test-read-write.R#117) 
  9. Error: RecordBatchFileWriter / RecordBatchFileReader roundtrips (@test-read_record_batch.R#26) 
  1. ...
  
  Error: testthat unit tests failed
  Execution halted
** running tests for arch 'x64' ... [7s] ERROR
  Running 'testthat.R' [7s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > # Licensed to the Apache Software Foundation (ASF) under one
  > # or more contributor license agreements.  See the NOTICE file
  > # distributed with this work for additional information
  > # regarding copyright ownership.  The ASF licenses this file
  > # to you under the Apache License, Version 2.0 (the
  > # "License"); you may not use this file except in compliance
  > # with the License.  You may obtain a copy of the License at
  > #
  > #   http://www.apache.org/licenses/LICENSE-2.0
  > #
  > # Unless required by applicable law or agreed to in writing,
  > # software distributed under the License is distributed on an
  > # "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
  > # KIND, either express or implied.  See the License for the
  > # specific language governing permissions and limitations
  > # under the License.
  > 
  > library(testthat)
  > library(arrow)
  
  Attaching package: 'arrow'
  
  The following object is masked from 'package:utils':
  
      timestamp
  
  The following objects are masked from 'package:base':
  
      array, table
  
  > library(tibble)
  > 
  > test_check("arrow")
  -- 1. Error: read_table handles various input streams (ARROW-3450, ARROW-3505) (
  could not find function "defer"
  1: local_tempfile() at testthat/test-Table.R:28
  2: defer_parent(unlink(tf), ...)
  3: eval(substitute(defer(expr, envir, priority), list(expr = substitute(expr), envir = parent.frame(2), 
         priority = priority)), envir = parent.frame())
  4: eval(substitute(defer(expr, envir, priority), list(expr = substitute(expr), envir = parent.frame(2), 
         priority = priority)), envir = parent.frame())
  
  -- 2. Error: Can read csv file (@test-arrow-csv-.R#21)  ------------------------
  could not find function "defer"
  1: local_tempfile() at testthat/test-arrow-csv-.R:21
  2: defer_parent(unlink(tf), ...)
  3: eval(substitute(defer(expr, envir, priority), list(expr = substitute(expr), envir = parent.frame(2), 
         priority = priority)), envir = parent.frame())
  4: eval(substitute(defer(expr, envir, priority), list(expr = substitute(expr), envir = parent.frame(2), 
         priority = priority)), envir = parent.frame())
  
  -- 3. Error: feather read/write round trip (@test-feather.R#23)  ---------------
  could not find function "defer"
  1: local_tempfile() at testthat/test-feather.R:23
  2: defer_parent(unlink(tf), ...)
  3: eval(substitute(defer(expr, envir, priority), list(expr = substitute(expr), envir = parent.frame(2), 
         priority = priority)), envir = parent.frame())
  4: eval(substitute(defer(expr, envir, priority), list(expr = substitute(expr), envir = parent.frame(2), 
         priority = priority)), envir = parent.frame())
  
  -- 4. Error: feather handles columns = <names> (@test-feather.R#63)  -----------
  could not find function "defer"
  1: local_tempfile() at testthat/test-feather.R:63
  2: defer_parent(unlink(tf), ...)
  3: eval(substitute(defer(expr, envir, priority), list(expr = substitute(expr), envir = parent.frame(2), 
         priority = priority)), envir = parent.frame())
  4: eval(substitute(defer(expr, envir, priority), list(expr = substitute(expr), envir = parent.frame(2), 
         priority = priority)), envir = parent.frame())
  
  -- 5. Error: feather handles columns = <integer> (@test-feather.R#76)  ---------
  could not find function "defer"
  1: local_tempfile() at testthat/test-feather.R:76
  2: defer_parent(unlink(tf), ...)
  3: eval(substitute(defer(expr, envir, priority), list(expr = substitute(expr), envir = parent.frame(2), 
         priority = priority)), envir = parent.frame())
  4: eval(substitute(defer(expr, envir, priority), list(expr = substitute(expr), envir = parent.frame(2), 
         priority = priority)), envir = parent.frame())
  
  -- 6. Error: feather read/write round trip (@test-feather.R#89)  ---------------
  could not find function "defer"
  1: local_tempfile() at testthat/test-feather.R:89
  2: defer_parent(unlink(tf), ...)
  3: eval(substitute(defer(expr, envir, priority), list(expr = substitute(expr), envir = parent.frame(2), 
         priority = priority)), envir = parent.frame())
  4: eval(substitute(defer(expr, envir, priority), list(expr = substitute(expr), envir = parent.frame(2), 
         priority = priority)), envir = parent.frame())
  
  -- 7. Error: arrow::table round trip (@test-read-write.R#87)  ------------------
  could not find function "defer"
  1: local_tempfile() at testthat/test-read-write.R:87
  2: defer_parent(unlink(tf), ...)
  3: eval(substitute(defer(expr, envir, priority), list(expr = substitute(expr), envir = parent.frame(2), 
         priority = priority)), envir = parent.frame())
  4: eval(substitute(defer(expr, envir, priority), list(expr = substitute(expr), envir = parent.frame(2), 
         priority = priority)), envir = parent.frame())
  
  -- 8. Error: arrow::table round trip handles NA in integer and numeric (@test-re
  could not find function "defer"
  1: local_tempfile() at testthat/test-read-write.R:117
  2: defer_parent(unlink(tf), ...)
  3: eval(substitute(defer(expr, envir, priority), list(expr = substitute(expr), envir = parent.frame(2), 
         priority = priority)), envir = parent.frame())
  4: eval(substitute(defer(expr, envir, priority), list(expr = substitute(expr), envir = parent.frame(2), 
         priority = priority)), envir = parent.frame())
  
  -- 9. Error: RecordBatchFileWriter / RecordBatchFileReader roundtrips (@test-rea
  could not find function "defer"
  1: local_tempfile() at testthat/test-read_record_batch.R:26
  2: defer_parent(unlink(tf), ...)
  3: eval(substitute(defer(expr, envir, priority), list(expr = substitute(expr), envir = parent.frame(2), 
         priority = priority)), envir = parent.frame())
  4: eval(substitute(defer(expr, envir, priority), list(expr = substitute(expr), envir = parent.frame(2), 
         priority = priority)), envir = parent.frame())
  
  -- 10. Error: read_record_batch() handles (raw|Buffer|InputStream, Schema) (ARRO
  could not find function "defer"
  1: read_record_batch(raw, schema) at testthat/test-read_record_batch.R:54
  2: read_record_batch.raw(raw, schema)
  3: close_on_exit(BufferReader(obj))
  4: defer_parent(x$close(), ...)
  5: eval(substitute(defer(expr, envir, priority), list(expr = substitute(expr), envir = parent.frame(2), 
         priority = priority)), envir = parent.frame())
  6: eval(substitute(defer(expr, envir, priority), list(expr = substitute(expr), envir = parent.frame(2), 
         priority = priority)), envir = parent.frame())
  
  -- 11. Error: read_record_batch() can handle (Message, Schema) parameters (ARROW
  could not find function "defer"
  1: close_on_exit(BufferReader(raw)) at testthat/test-read_record_batch.R:68
  2: defer_parent(x$close(), ...)
  3: eval(substitute(defer(expr, envir, priority), list(expr = substitute(expr), envir = parent.frame(2), 
         priority = priority)), envir = parent.frame())
  4: eval(substitute(defer(expr, envir, priority), list(expr = substitute(expr), envir = parent.frame(2), 
         priority = priority)), envir = parent.frame())
  
  == testthat results  ===========================================================
  OK: 723 SKIPPED: 2 FAILED: 11
  1. Error: read_table handles various input streams (ARROW-3450, ARROW-3505) (@test-Table.R#28) 
  2. Error: Can read csv file (@test-arrow-csv-.R#21) 
  3. Error: feather read/write round trip (@test-feather.R#23) 
  4. Error: feather handles columns = <names> (@test-feather.R#63) 
  5. Error: feather handles columns = <integer> (@test-feather.R#76) 
  6. Error: feather read/write round trip (@test-feather.R#89) 
  7. Error: arrow::table round trip (@test-read-write.R#87) 
  8. Error: arrow::table round trip handles NA in integer and numeric (@test-read-write.R#117) 
  9. Error: RecordBatchFileWriter / RecordBatchFileReader roundtrips (@test-read_record_batch.R#26) 
  1. ...
  
  Error: testthat unit tests failed
  Execution halted
* checking PDF version of manual ... OK
* DONE
Status: 2 ERRORs, 4 NOTEs

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          is depended upon by

          New Feature - A new feature of the product, which has yet to be developed. ARROW-3204 [R] Enable package to be made available on CRAN

          • Critical - Crashes, loss of data, severe memory leak.
          • Resolved
          links to

          Web Link GitHub Pull Request #4011

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              javierluraschi Javier Luraschi
              javierluraschi Javier Luraschi
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                Updated:
                Resolved:

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