Details
-
Bug
-
Status: Resolved
-
Major
-
Resolution: Fixed
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0.9.0
Description
I am trying current master.
I ran:
{{{{
python setup.py build_ext --build-type=$ARROW_BUILD_TYPE --with-parquet --with-plasma --bundle-arrow-cpp bdist_wheel
}}}}
Output:
{{{{
running build_ext
creating build
creating build/temp.linux-x86_64-3.6
– Runnning cmake for pyarrow
cmake -DPYTHON_EXECUTABLE=.../Temp/arrow/pyarrow/bin/python -DPYARROW_BUILD_PARQUET=on -DPYARROW_BOOST_USE_SHARED=on -DPYARROW_BUILD_PLASMA=on -DPYARROW_BUNDLE_ARROW_CPP=ON -DCMAKE_BUILD_TYPE=release .../Temp/arrow/arrow/python
– The C compiler identification is GNU 7.2.0
– The CXX compiler identification is GNU 7.2.0
– Check for working C compiler: /usr/bin/cc
– Check for working C compiler: /usr/bin/cc – works
– Detecting C compiler ABI info
– Detecting C compiler ABI info - done
– Detecting C compile features
– Detecting C compile features - done
– Check for working CXX compiler: /usr/bin/c++
– Check for working CXX compiler: /usr/bin/c++ – works
– Detecting CXX compiler ABI info
– Detecting CXX compiler ABI info - done
– Detecting CXX compile features
– Detecting CXX compile features - done
INFOCompiler command: /usr/bin/c++
INFOCompiler version: Using built-in specs.
COLLECT_GCC=/usr/bin/c++
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/7/lto-wrapper
OFFLOAD_TARGET_NAMES=nvptx-none
OFFLOAD_TARGET_DEFAULT=1
Target: x86_64-linux-gnu
Configured with: ../src/configure v --with-pkgversion='Ubuntu 7.2.0-8ubuntu3.2' --with-bugurl=file:///usr/share/doc/gcc-7/README.Bugs --enable-languages=c,ada,c+,go,brig,d,fortran,objc,obj-c+ --prefix=/usr --with-gcc-major-version-only --program-suffix=-7 --program-prefix=x86_64-linux-gnu --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 7.2.0 (Ubuntu 7.2.0-8ubuntu3.2)
INFOCompiler id: GNU
Selected compiler gcc 7.2.0
– Performing Test CXX_SUPPORTS_SSE3
– Performing Test CXX_SUPPORTS_SSE3 - Success
– Performing Test CXX_SUPPORTS_ALTIVEC
– Performing Test CXX_SUPPORTS_ALTIVEC - Failed
Configured for RELEASE build (set with cmake -DCMAKE_BUILD_TYPE=
)
– Build Type: RELEASE
– Build output directory: .../Temp/arrow/arrow/python/build/temp.linux-x86_64-3.6/release/
– Found PythonInterp: .../Temp/arrow/pyarrow/bin/python (found version "3.6.3")
– Searching for Python libs in .../Temp/arrow/pyarrow/lib64;.../Temp/arrow/pyarrow/lib;/usr/lib/python3.6/config-3.6m-x86_64-linux-gnu
– Looking for python3.6m
– Found Python lib /usr/lib/python3.6/config-3.6m-x86_64-linux-gnu/libpython3.6m.so
– Found PythonLibs: /usr/lib/python3.6/config-3.6m-x86_64-linux-gnu/libpython3.6m.so
– Found NumPy: version "1.14.1" .../Temp/arrow/pyarrow/lib/python3.6/site-packages/numpy/core/include
– Searching for Python libs in .../Temp/arrow/pyarrow/lib64;.../Temp/arrow/pyarrow/lib;/usr/lib/python3.6/config-3.6m-x86_64-linux-gnu
– Looking for python3.6m
– Found Python lib /usr/lib/python3.6/config-3.6m-x86_64-linux-gnu/libpython3.6m.so
– Found PkgConfig: /usr/bin/pkg-config (found version "0.29.1")
– Checking for module 'arrow'
– Found arrow, version 0.9.0-SNAPSHOT
– Arrow ABI version: 0.0.0
– Arrow SO version: 0
– Found the Arrow core library: .../Temp/arrow/dist/lib/libarrow.so
– Found the Arrow Python library: .../Temp/arrow/dist/lib/libarrow_python.so
– Boost version: 1.63.0
– Found the following Boost libraries:
– system
– filesystem
– regex
Added shared library dependency arrow: .../Temp/arrow/dist/lib/libarrow.so
Added shared library dependency arrow_python: .../Temp/arrow/dist/lib/libarrow_python.so
– Found the Parquet library: .../Temp/arrow/dist/lib/libparquet.so
Added shared library dependency parquet: .../Temp/arrow/dist/lib/libparquet.so
– Checking for module 'plasma'
– Found plasma, version
– Plasma ABI version: 0.0.0
– Plasma SO version: 0
– Found the Plasma core library: .../Temp/arrow/dist/lib/libplasma.so
– Found Plasma executable: .../Temp/arrow/dist/bin/plasma_store
Added shared library dependency libplasma: .../Temp/arrow/dist/lib/libplasma.so
– Configuring done
– Generating done
– Build files have been written to: .../Temp/arrow/arrow/python/build/temp.linux-x86_64-3.6
– Finished cmake for pyarrow
– Running cmake --build for pyarrow
make
Scanning dependencies of target lib_pyx
[ 11%] Compiling Cython CXX source for lib...
[ 11%] Built target lib_pyx
Scanning dependencies of target lib
[ 22%] Building CXX object CMakeFiles/lib.dir/lib.cxx.o
[ 33%] Linking CXX shared module release/lib.cpython-36m-x86_64-linux-gnu.so
[ 33%] Built target lib
Scanning dependencies of target _parquet_pyx
[ 44%] Compiling Cython CXX source for _parquet...
[ 44%] Built target _parquet_pyx
Scanning dependencies of target _parquet
[ 55%] Building CXX object CMakeFiles/_parquet.dir/_parquet.cxx.o
[ 66%] Linking CXX shared module release/_parquet.cpython-36m-x86_64-linux-gnu.so
[ 66%] Built target _parquet
Scanning dependencies of target plasma_pyx
[ 77%] Compiling Cython CXX source for plasma...
[ 77%] Built target plasma_pyx
Scanning dependencies of target plasma
[ 88%] Building CXX object CMakeFiles/plasma.dir/plasma.cxx.o
[100%] Linking CXX shared module release/plasma.cpython-36m-x86_64-linux-gnu.so
[100%] Built target plasma
– Finished cmake --build for pyarrow
.../Temp/arrow/arrow/python/build/lib.linux-x86_64-3.6/pyarrow
['release/libarrow.so.0.0.0', 'release/libarrow.so.0', 'release/libarrow.so']
release/libarrow.so.0.0.0
['release/libarrow_python.so.0.0.0', 'release/libarrow_python.so.0', 'release/libarrow_python.so']
release/libarrow_python.so.0.0.0
['release/libplasma.so.0.0.0', 'release/libplasma.so.0', 'release/libplasma.so']
release/libplasma.so.0.0.0
['release/libparquet.so.1.3.2', 'release/libparquet.so.1', 'release/libparquet.so']
release/libparquet.so.1.3.2
}}}}
And after that it crashes because it cannot find arrow_boost_filesystem in build_prefix in _move_shared_libs_unix call which makes libs variable there empty.
If I do:
{{{{
$ find . -name *.so
./build/lib.linux-x86_64-3.6/pyarrow/libparquet.so
./build/lib.linux-x86_64-3.6/pyarrow/libplasma.so
./build/lib.linux-x86_64-3.6/pyarrow/libarrow.so
./build/lib.linux-x86_64-3.6/pyarrow/libarrow_python.so
./build/temp.linux-x86_64-3.6/release/_parquet.cpython-36m-x86_64-linux-gnu.so
./build/temp.linux-x86_64-3.6/release/libparquet.so
./build/temp.linux-x86_64-3.6/release/libboost_filesystem.so
./build/temp.linux-x86_64-3.6/release/libplasma.so
./build/temp.linux-x86_64-3.6/release/libarrow.so
./build/temp.linux-x86_64-3.6/release/libboost_system.so
./build/temp.linux-x86_64-3.6/release/lib.cpython-36m-x86_64-linux-gnu.so
./build/temp.linux-x86_64-3.6/release/libboost_regex.so
./build/temp.linux-x86_64-3.6/release/libarrow_python.so
./build/temp.linux-x86_64-3.6/release/plasma.cpython-36m-x86_64-linux-gnu.so
./pyarrow/_parquet.cpython-36m-x86_64-linux-gnu.so
./pyarrow/lib.cpython-36m-x86_64-linux-gnu.so
./pyarrow/plasma.cpython-36m-x86_64-linux-gnu.so
}}}}
So it seems the issue is that the filename is libboost_filesystem.so, but it is trying to move libarrow_boost_filesystem.so?
Changing lines in setup.py to:
{{{{
move_shared_libs(build_prefix, build_lib, "boost_filesystem")
move_shared_libs(build_prefix, build_lib, "boost_system")
move_shared_libs(build_prefix, build_lib, "boost_regex")
}}}}
seems to make it build.
