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Taking this off the list of things to fix in 3.3. We really need someone who has access to Python 2.5 and a 64 bit platform to help us do this one and test it. Until then we could do more harm than good if we start fiddling with the code with no way to actually validate it works ourselves.
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The attached patch ssizecheck.diff contains a small modification which will skip any comment that starts with "/* PYTHON 2.5:"
eg
/* PYTHON 2.5: PyTuple_New uses Py_ssize_t for input parameters */
The addition of these comments will allow us to keep track of the code areas which will need attention for full python 2.5 / 64-bit support.