[MAHOUT-1946] ViennaCL not being picked up by JNI

• Type: Bug
• Status: Resolved
• Priority: Blocker
• Resolution: Fixed
• Fix Version/s: 0.13.0
• Sprint: 0.14.0 Release
• Assignee: Andrew Palumbo
• Reporter: Andrew Musselman
• Created: 26/Feb/17 22:15
• Updated: 04/Mar/18 02:43
• Resolved: 27/Feb/17 02:05

Description

Using the PR for MAHOUT-1938 but probably in master as well:

scala> :load ./examples/bin/SparseSparseDrmTimer.mscala
Loading ./examples/bin/SparseSparseDrmTimer.mscala...
timeSparseDRMMMul: (m: Int, n: Int, s: Int, para: Int, pctDense: Double, seed: Long)Long

scala> timeSparseDRMMMul(100,100,100,1,.02,1234L)
[INFO] Creating org.apache.mahout.viennacl.opencl.GPUMMul solver
[INFO] Successfully created org.apache.mahout.viennacl.opencl.GPUMMul solver
gpuRWCW
17/02/26 13:18:54 ERROR Executor: Exception in task 0.0 in stage 3.0 (TID 3)
java.lang.UnsatisfiedLinkError: no jniViennaCL in java.library.path
at java.lang.ClassLoader.loadLibrary(ClassLoader.java:1867)
at java.lang.Runtime.loadLibrary0(Runtime.java:870)
at java.lang.System.loadLibrary(System.java:1122)
at org.bytedeco.javacpp.Loader.loadLibrary(Loader.java:726)
at org.bytedeco.javacpp.Loader.load(Loader.java:501)
at org.bytedeco.javacpp.Loader.load(Loader.java:434)
at org.apache.mahout.viennacl.opencl.javacpp.Context$.loadLib(Context.scala:63)
at org.apache.mahout.viennacl.opencl.javacpp.Context$.<init>(Context.scala:65)
at org.apache.mahout.viennacl.opencl.javacpp.Context$.<clinit>(Context.scala)
at org.apache.mahout.viennacl.opencl.GPUMMul$.org$apache$mahout$viennacl$opencl$GPUMMul$$gpuRWCW(GPUMMul.scala:171)
at org.apache.mahout.viennacl.opencl.GPUMMul$$anonfun$11.apply(GPUMMul.scala:77)
at org.apache.mahout.viennacl.opencl.GPUMMul$$anonfun$11.apply(GPUMMul.scala:77)
at org.apache.mahout.viennacl.opencl.GPUMMul$.apply(GPUMMul.scala:127)
at org.apache.mahout.viennacl.opencl.GPUMMul$.apply(GPUMMul.scala:33)
at org.apache.mahout.math.scalabindings.RLikeMatrixOps.$percent$times$percent(RLikeMatrixOps.scala:37)
at org.apache.mahout.sparkbindings.blas.ABt$.org$apache$mahout$sparkbindings$blas$ABt$$mmulFunc$1(ABt.scala:98)
at org.apache.mahout.sparkbindings.blas.ABt$$anonfun$6.apply(ABt.scala:113)
at org.apache.mahout.sparkbindings.blas.ABt$$anonfun$6.apply(ABt.scala:113)
at org.apache.mahout.sparkbindings.blas.ABt$$anonfun$pairwiseApply$1.apply(ABt.scala:209)
at org.apache.mahout.sparkbindings.blas.ABt$$anonfun$pairwiseApply$1.apply(ABt.scala:209)
at scala.collection.Iterator$$anon$11.next(Iterator.scala:328)
at org.apache.spark.util.collection.ExternalSorter.insertAll(ExternalSorter.scala:191)
at org.apache.spark.shuffle.sort.SortShuffleWriter.write(SortShuffleWriter.scala:64)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:73)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:41)
at org.apache.spark.scheduler.Task.run(Task.scala:89)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:227)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
17/02/26 13:18:54 ERROR SparkUncaughtExceptionHandler: Uncaught exception in thread Thread[Executor task launch worker-0,5,main]
java.lang.UnsatisfiedLinkError: no jniViennaCL in java.library.path
at java.lang.ClassLoader.loadLibrary(ClassLoader.java:1867)
at java.lang.Runtime.loadLibrary0(Runtime.java:870)
at java.lang.System.loadLibrary(System.java:1122)
at org.bytedeco.javacpp.Loader.loadLibrary(Loader.java:726)
at org.bytedeco.javacpp.Loader.load(Loader.java:501)
at org.bytedeco.javacpp.Loader.load(Loader.java:434)
at org.apache.mahout.viennacl.opencl.javacpp.Context$.loadLib(Context.scala:63)
at org.apache.mahout.viennacl.opencl.javacpp.Context$.<init>(Context.scala:65)
at org.apache.mahout.viennacl.opencl.javacpp.Context$.<clinit>(Context.scala)
at org.apache.mahout.viennacl.opencl.GPUMMul$.org$apache$mahout$viennacl$opencl$GPUMMul$$gpuRWCW(GPUMMul.scala:171)
at org.apache.mahout.viennacl.opencl.GPUMMul$$anonfun$11.apply(GPUMMul.scala:77)
at org.apache.mahout.viennacl.opencl.GPUMMul$$anonfun$11.apply(GPUMMul.scala:77)
at org.apache.mahout.viennacl.opencl.GPUMMul$.apply(GPUMMul.scala:127)
at org.apache.mahout.viennacl.opencl.GPUMMul$.apply(GPUMMul.scala:33)
at org.apache.mahout.math.scalabindings.RLikeMatrixOps.$percent$times$percent(RLikeMatrixOps.scala:37)
at org.apache.mahout.sparkbindings.blas.ABt$.org$apache$mahout$sparkbindings$blas$ABt$$mmulFunc$1(ABt.scala:98)
at org.apache.mahout.sparkbindings.blas.ABt$$anonfun$6.apply(ABt.scala:113)
at org.apache.mahout.sparkbindings.blas.ABt$$anonfun$6.apply(ABt.scala:113)
at org.apache.mahout.sparkbindings.blas.ABt$$anonfun$pairwiseApply$1.apply(ABt.scala:209)
at org.apache.mahout.sparkbindings.blas.ABt$$anonfun$pairwiseApply$1.apply(ABt.scala:209)
at scala.collection.Iterator$$anon$11.next(Iterator.scala:328)
at org.apache.spark.util.collection.ExternalSorter.insertAll(ExternalSorter.scala:191)
at org.apache.spark.shuffle.sort.SortShuffleWriter.write(SortShuffleWriter.scala:64)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:73)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:41)
at org.apache.spark.scheduler.Task.run(Task.scala:89)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:227)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
17/02/26 13:18:54 WARN TaskSetManager: Lost task 0.0 in stage 3.0 (TID 3, localhost): java.lang.UnsatisfiedLinkError: no jniViennaCL in java.library.path
at java.lang.ClassLoader.loadLibrary(ClassLoader.java:1867)
at java.lang.Runtime.loadLibrary0(Runtime.java:870)
at java.lang.System.loadLibrary(System.java:1122)
at org.bytedeco.javacpp.Loader.loadLibrary(Loader.java:726)
at org.bytedeco.javacpp.Loader.load(Loader.java:501)
at org.bytedeco.javacpp.Loader.load(Loader.java:434)
at org.apache.mahout.viennacl.opencl.javacpp.Context$.loadLib(Context.scala:63)
at org.apache.mahout.viennacl.opencl.javacpp.Context$.<init>(Context.scala:65)
at org.apache.mahout.viennacl.opencl.javacpp.Context$.<clinit>(Context.scala)
at org.apache.mahout.viennacl.opencl.GPUMMul$.org$apache$mahout$viennacl$opencl$GPUMMul$$gpuRWCW(GPUMMul.scala:171)
at org.apache.mahout.viennacl.opencl.GPUMMul$$anonfun$11.apply(GPUMMul.scala:77)
at org.apache.mahout.viennacl.opencl.GPUMMul$$anonfun$11.apply(GPUMMul.scala:77)
at org.apache.mahout.viennacl.opencl.GPUMMul$.apply(GPUMMul.scala:127)
at org.apache.mahout.viennacl.opencl.GPUMMul$.apply(GPUMMul.scala:33)
at org.apache.mahout.math.scalabindings.RLikeMatrixOps.$percent$times$percent(RLikeMatrixOps.scala:37)
at org.apache.mahout.sparkbindings.blas.ABt$.org$apache$mahout$sparkbindings$blas$ABt$$mmulFunc$1(ABt.scala:98)
at org.apache.mahout.sparkbindings.blas.ABt$$anonfun$6.apply(ABt.scala:113)
at org.apache.mahout.sparkbindings.blas.ABt$$anonfun$6.apply(ABt.scala:113)
at org.apache.mahout.sparkbindings.blas.ABt$$anonfun$pairwiseApply$1.apply(ABt.scala:209)
at org.apache.mahout.sparkbindings.blas.ABt$$anonfun$pairwiseApply$1.apply(ABt.scala:209)
at scala.collection.Iterator$$anon$11.next(Iterator.scala:328)
at org.apache.spark.util.collection.ExternalSorter.insertAll(ExternalSorter.scala:191)
at org.apache.spark.shuffle.sort.SortShuffleWriter.write(SortShuffleWriter.scala:64)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:73)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:41)
at org.apache.spark.scheduler.Task.run(Task.scala:89)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:227)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)

17/02/26 13:18:54 ERROR TaskSetManager: Task 0 in stage 3.0 failed 1 times; aborting job
17/02/26 13:18:54 ERROR ShutdownHookManager: Exception while deleting Spark temp dir: /tmp/spark-34fcf1f5-a8e6-46f8-bdd6-dd1abab2ded1
java.io.IOException: Failed to delete: /tmp/spark-34fcf1f5-a8e6-46f8-bdd6-dd1abab2ded1
at org.apache.spark.util.Utils$.deleteRecursively(Utils.scala:929)
at org.apache.spark.util.ShutdownHookManager$$anonfun$1$$anonfun$apply$mcV$sp$3.apply(ShutdownHookManager.scala:65)
at org.apache.spark.util.ShutdownHookManager$$anonfun$1$$anonfun$apply$mcV$sp$3.apply(ShutdownHookManager.scala:62)
at scala.collection.IndexedSeqOptimized$class.foreach(IndexedSeqOptimized.scala:33)
at scala.collection.mutable.ArrayOps$ofRef.foreach(ArrayOps.scala:108)
at org.apache.spark.util.ShutdownHookManager$$anonfun$1.apply$mcV$sp(ShutdownHookManager.scala:62)
at org.apache.spark.util.SparkShutdownHook.run(ShutdownHookManager.scala:267)
at org.apache.spark.util.SparkShutdownHookManager$$anonfun$runAll$1$$anonfun$apply$mcV$sp$1.apply$mcV$sp(ShutdownHookManager.scala:239)
at org.apache.spark.util.SparkShutdownHookManager$$anonfun$runAll$1$$anonfun$apply$mcV$sp$1.apply(ShutdownHookManager.scala:239)
at org.apache.spark.util.SparkShutdownHookManager$$anonfun$runAll$1$$anonfun$apply$mcV$sp$1.apply(ShutdownHookManager.scala:239)
at org.apache.spark.util.Utils$.logUncaughtExceptions(Utils.scala:1817)
at org.apache.spark.util.SparkShutdownHookManager$$anonfun$runAll$1.apply$mcV$sp(ShutdownHookManager.scala:239)
at org.apache.spark.util.SparkShutdownHookManager$$anonfun$runAll$1.apply(ShutdownHookManager.scala:239)
at org.apache.spark.util.SparkShutdownHookManager$$anonfun$runAll$1.apply(ShutdownHookManager.scala:239)
at scala.util.Try$.apply(Try.scala:161)
at org.apache.spark.util.SparkShutdownHookManager.runAll(ShutdownHookManager.scala:239)
at org.apache.spark.util.SparkShutdownHookManager$$anon$2.run(ShutdownHookManager.scala:218)
at org.apache.hadoop.util.ShutdownHookManager$1.run(ShutdownHookManager.java:54)