[BEAM-4749] fastavro breaks macos tests - ASF JIRA

Details

Type: Improvement
Status: Resolved
Priority: P2
Resolution: Fixed
Affects Version/s: None
Fix Version/s: Not applicable
Component/s: sdk-py-core
Labels:
None

Description

Recent addition of the fastavro dependency is breaking python linter in macos. At least for some cases, because it requires a compiler.

Could we optionally depend on fastavro, and fallback to regular avro package?

Log:

> Task :beam-sdks-python:lintPy27

ERROR: invocation failed (exit code 1), logfile: /Users/relax/beam-gradle/beam/sdks/python/target/.tox/py27-lint/log/py27-lint-2.log

ERROR: actionid: py27-lint

msg: installpkg

cmdargs: ['/Users/relax/beam-gradle/beam/sdks/python/target/.tox/py27-lint/bin/python', '/Users/relax/beam-gradle/beam/sdks/python/target/.tox/py27-lint/bin/pip', 'install', '/Users/relax/beam-gradle/beam/sdks/python/target/.tox/dist/apache-beam-2.6.0.dev0.zip[test]']

Processing ./target/.tox/dist/apache-beam-2.6.0.dev0.zip

Collecting avro<2.0.0,>=1.8.1 (from apache-beam==2.6.0.dev0)

Collecting crcmod<2.0,>=1.7 (from apache-beam==2.6.0.dev0)

Collecting dill==0.2.6 (from apache-beam==2.6.0.dev0)

Collecting fastavro==0.19.7 (from apache-beam==2.6.0.dev0)

Using cached https://files.pythonhosted.org/packages/a7/0a/b08ba5cef63c675e8442c2bf1cbcef90c8b9f824be2202d492f0cedb0913/fastavro-0.19.7.tar.gz

Collecting grpcio<2,>=1.8 (from apache-beam==2.6.0.dev0)

Using cached https://files.pythonhosted.org/packages/66/89/4a90caabd51c17686cbb48a9bbe8c592c4be929c0d2542d2ffde76b0d671/grpcio-1.13.0-cp27-cp27m-macosx_10_12_x86_64.whl

Collecting hdfs<3.0.0,>=2.1.0 (from apache-beam==2.6.0.dev0)

Collecting httplib2<=0.11.3,>=0.8 (from apache-beam==2.6.0.dev0)

Collecting mock<3.0.0,>=1.0.1 (from apache-beam==2.6.0.dev0)

Using cached https://files.pythonhosted.org/packages/e6/35/f187bdf23be87092bd0f1200d43d23076cee4d0dec109f195173fd3ebc79/mock-2.0.0-py2.py3-none-any.whl

Collecting oauth2client<5,>=2.0.1 (from apache-beam==2.6.0.dev0)

Using cached https://files.pythonhosted.org/packages/82/d8/3eab58811282ac7271a081ba5c0d4b875ce786ca68ce43e2a62ade32e9a8/oauth2client-4.1.2-py2.py3-none-any.whl

Collecting protobuf<4,>=3.5.0.post1 (from apache-beam==2.6.0.dev0)

Using cached https://files.pythonhosted.org/packages/4f/56/a21f2d077ceae7fd521c0ed31fb8bb1c7f13ffbb09bf7dd27de6cf6bad08/protobuf-3.6.0-cp27-cp27m-macosx_10_6_intel.macosx_10_9_intel.macosx_10_9_x86_64.macosx_10_10_intel.macosx_10_10_x86_64.whl

Collecting pytz<=2018.4,>=2018.3 (from apache-beam==2.6.0.dev0)

Using cached https://files.pythonhosted.org/packages/dc/83/15f7833b70d3e067ca91467ca245bae0f6fe56ddc7451aa0dc5606b120f2/pytz-2018.4-py2.py3-none-any.whl

Collecting pyyaml<4.0.0,>=3.12 (from apache-beam==2.6.0.dev0)

Using cached https://files.pythonhosted.org/packages/4a/85/db5a2df477072b2902b0eb892feb37d88ac635d36245a72a6a69b23b383a/PyYAML-3.12.tar.gz

Collecting pyvcf<0.7.0,>=0.6.8 (from apache-beam==2.6.0.dev0)

Requirement already satisfied: six<1.12,>=1.9 in ./target/.tox/py27-lint/lib/python2.7/site-packages (from apache-beam==2.6.0.dev0) (1.11.0)

Collecting typing<3.7.0,>=3.6.0 (from apache-beam==2.6.0.dev0)

Using cached https://files.pythonhosted.org/packages/0d/4d/4e5985d075d241d686a1663fa1f88b61d544658d08c1375c7c6aac32afc3/typing-3.6.4-py2-none-any.whl

Collecting futures<4.0.0,>=3.1.1 (from apache-beam==2.6.0.dev0)

Using cached https://files.pythonhosted.org/packages/2d/99/b2c4e9d5a30f6471e410a146232b4118e697fa3ffc06d6a65efde84debd0/futures-3.2.0-py2-none-any.whl

Requirement already satisfied: future<1.0.0,>=0.16.0 in ./target/.tox/py27-lint/lib/python2.7/site-packages (from apache-beam==2.6.0.dev0) (0.16.0)

Collecting nose>=1.3.7 (from apache-beam==2.6.0.dev0)

Using cached https://files.pythonhosted.org/packages/99/4f/13fb671119e65c4dce97c60e67d3fd9e6f7f809f2b307e2611f4701205cb/nose-1.3.7-py2-none-any.whl

Collecting pyhamcrest<2.0,>=1.9 (from apache-beam==2.6.0.dev0)

Using cached https://files.pythonhosted.org/packages/9a/d5/d37fd731b7d0e91afcc84577edeccf4638b4f9b82f5ffe2f8b62e2ddc609/PyHamcrest-1.9.0-py2.py3-none-any.whl

Requirement already satisfied: setuptools>=18.0 in ./target/.tox/py27-lint/lib/python2.7/site-packages (from fastavro==0.19.7->apache-beam==2.6.0.dev0) (39.2.0)

Requirement already satisfied: enum34>=1.0.4 in ./target/.tox/py27-lint/lib/python2.7/site-packages (from grpcio<2,>=1.8->apache-beam==2.6.0.dev0) (1.1.6)

Collecting docopt (from hdfs<3.0.0,>=2.1.0->apache-beam==2.6.0.dev0)

Collecting requests>=2.7.0 (from hdfs<3.0.0,>=2.1.0->apache-beam==2.6.0.dev0)

Using cached https://files.pythonhosted.org/packages/65/47/7e02164a2a3db50ed6d8a6ab1d6d60b69c4c3fdf57a284257925dfc12bda/requests-2.19.1-py2.py3-none-any.whl

Collecting pbr>=0.11 (from mock<3.0.0,>=1.0.1->apache-beam==2.6.0.dev0)

Using cached https://files.pythonhosted.org/packages/b3/5d/c196041ffdf3e34ba206db6d61d1f893a75e1f3435699ade9bd65e089a3d/pbr-4.0.4-py2.py3-none-any.whl

Collecting funcsigs>=1; python_version < "3.3" (from mock<3.0.0,>=1.0.1->apache-beam==2.6.0.dev0)

Using cached https://files.pythonhosted.org/packages/69/cb/f5be453359271714c01b9bd06126eaf2e368f1fddfff30818754b5ac2328/funcsigs-1.0.2-py2.py3-none-any.whl

Collecting rsa>=3.1.4 (from oauth2client<5,>=2.0.1->apache-beam==2.6.0.dev0)

Using cached https://files.pythonhosted.org/packages/e1/ae/baedc9cb175552e95f3395c43055a6a5e125ae4d48a1d7a924baca83e92e/rsa-3.4.2-py2.py3-none-any.whl

Collecting pyasn1>=0.1.7 (from oauth2client<5,>=2.0.1->apache-beam==2.6.0.dev0)

Using cached https://files.pythonhosted.org/packages/a0/70/2c27740f08e477499ce19eefe05dbcae6f19fdc49e9e82ce4768be0643b9/pyasn1-0.4.3-py2.py3-none-any.whl

Collecting pyasn1-modules>=0.0.5 (from oauth2client<5,>=2.0.1->apache-beam==2.6.0.dev0)

Using cached https://files.pythonhosted.org/packages/19/02/fa63f7ba30a0d7b925ca29d034510fc1ffde53264b71b4155022ddf3ab5d/pyasn1_modules-0.2.2-py2.py3-none-any.whl

Collecting chardet<3.1.0,>=3.0.2 (from requests>=2.7.0->hdfs<3.0.0,>=2.1.0->apache-beam==2.6.0.dev0)

Using cached https://files.pythonhosted.org/packages/bc/a9/01ffebfb562e4274b6487b4bb1ddec7ca55ec7510b22e4c51f14098443b8/chardet-3.0.4-py2.py3-none-any.whl

Collecting idna<2.8,>=2.5 (from requests>=2.7.0->hdfs<3.0.0,>=2.1.0->apache-beam==2.6.0.dev0)

Using cached https://files.pythonhosted.org/packages/4b/2a/0276479a4b3caeb8a8c1af2f8e4355746a97fab05a372e4a2c6a6b876165/idna-2.7-py2.py3-none-any.whl

Collecting urllib3<1.24,>=1.21.1 (from requests>=2.7.0->hdfs<3.0.0,>=2.1.0->apache-beam==2.6.0.dev0)

Using cached https://files.pythonhosted.org/packages/bd/c9/6fdd990019071a4a32a5e7cb78a1d92c53851ef4f56f62a3486e6a7d8ffb/urllib3-1.23-py2.py3-none-any.whl

Collecting certifi>=2017.4.17 (from requests>=2.7.0->hdfs<3.0.0,>=2.1.0->apache-beam==2.6.0.dev0)

Using cached https://files.pythonhosted.org/packages/7c/e6/92ad559b7192d846975fc916b65f667c7b8c3a32bea7372340bfe9a15fa5/certifi-2018.4.16-py2.py3-none-any.whl

Building wheels for collected packages: apache-beam, fastavro, pyyaml

Running setup.py bdist_wheel for apache-beam: started

Running setup.py bdist_wheel for apache-beam: finished with status 'done'

Stored in directory: /Users/relax/Library/Caches/pip/wheels/a3/18/08/60ce57e27e8b04460419c9463b9b6da19a8aab9fb64afc612f

Running setup.py bdist_wheel for fastavro: started

Running setup.py bdist_wheel for fastavro: finished with status 'error'

Complete output from command /Users/relax/beam-gradle/beam/sdks/python/target/.tox/py27-lint/bin/python -u -c "import setuptools, tokenize;_file='/private/var/folders/7p/4pkdvcd52b36bzwq9lts1frh000r4y/T/pip-install-WX5Ntf/fastavro/setup.py';f=getattr(tokenize, 'open', open)(file);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file_, 'exec'))" bdist_wheel -d /private/var/folders/7p/4pkdvcd52b36bzwq9lts1frh000r4y/T/pip-wheel-p6UGao --python-tag cp27:

running bdist_wheel

running build

running build_py

creating build

creating build/lib.macosx-10.4-x86_64-2.7

creating build/lib.macosx-10.4-x86_64-2.7/fastavro

copying fastavro/_schema_common.py -> build/lib.macosx-10.4-x86_64-2.7/fastavro

copying fastavro/_schema_py.py -> build/lib.macosx-10.4-x86_64-2.7/fastavro

copying fastavro/write.py -> build/lib.macosx-10.4-x86_64-2.7/fastavro

copying fastavro/_write_py.py -> build/lib.macosx-10.4-x86_64-2.7/fastavro

copying fastavro/_init_.py -> build/lib.macosx-10.4-x86_64-2.7/fastavro

copying fastavro/_read_py.py -> build/lib.macosx-10.4-x86_64-2.7/fastavro

copying fastavro/_read_common.py -> build/lib.macosx-10.4-x86_64-2.7/fastavro

copying fastavro/_validate_common.py -> build/lib.macosx-10.4-x86_64-2.7/fastavro

copying fastavro/_validation_py.py -> build/lib.macosx-10.4-x86_64-2.7/fastavro

copying fastavro/six.py -> build/lib.macosx-10.4-x86_64-2.7/fastavro

copying fastavro/_timezone.py -> build/lib.macosx-10.4-x86_64-2.7/fastavro

copying fastavro/_main_.py -> build/lib.macosx-10.4-x86_64-2.7/fastavro

copying fastavro/const.py -> build/lib.macosx-10.4-x86_64-2.7/fastavro

copying fastavro/schema.py -> build/lib.macosx-10.4-x86_64-2.7/fastavro

copying fastavro/read.py -> build/lib.macosx-10.4-x86_64-2.7/fastavro

copying fastavro/validation.py -> build/lib.macosx-10.4-x86_64-2.7/fastavro

running build_ext

building 'fastavro._read' extension

creating build/temp.macosx-10.4-x86_64-2.7

creating build/temp.macosx-10.4-x86_64-2.7/fastavro

gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -Os -Wall -Wstrict-prototypes -I/Library/GoogleCorpSupport/Python/2.7/include/python2.7 -c fastavro/_read.c -o build/temp.macosx-10.4-x86_64-2.7/fastavro/_read.o

xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun

error: command 'gcc' failed with exit status 1

----------------------------------------

Failed building wheel for fastavro

Running setup.py clean for fastavro

Running setup.py bdist_wheel for pyyaml: started

Running setup.py bdist_wheel for pyyaml: finished with status 'done'

Stored in directory: /Users/relax/Library/Caches/pip/wheels/03/05/65/bdc14f2c6e09e82ae3e0f13d021e1b6b2481437ea2f207df3f

Successfully built apache-beam pyyaml

Failed to build fastavro

Installing collected packages: avro, crcmod, dill, fastavro, futures, grpcio, docopt, chardet, idna, urllib3, certifi, requests, hdfs, httplib2, pbr, funcsigs, mock, pyasn1, rsa, pyasn1-modules, oauth2client, protobuf, pytz, pyyaml, pyvcf, typing, nose, pyhamcrest, apache-beam

Running setup.py install for fastavro: started

Running setup.py install for fastavro: finished with status 'error'

Complete output from command /Users/relax/beam-gradle/beam/sdks/python/target/.tox/py27-lint/bin/python -u -c "import setuptools, tokenize;_file='/private/var/folders/7p/4pkdvcd52b36bzwq9lts1frh000r4y/T/pip-install-WX5Ntf/fastavro/setup.py';f=getattr(tokenize, 'open', open)(file);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file_, 'exec'))" install --record /private/var/folders/7p/4pkdvcd52b36bzwq9lts1frh000r4y/T/pip-record-sAEfXi/install-record.txt --single-version-externally-managed --compile --install-headers /Users/relax/beam-gradle/beam/sdks/python/target/.tox/py27-lint/include/site/python2.7/fastavro:

running install