Uploaded image for project: 'Accumulo'
  1. Accumulo
  2. ACCUMULO-3215

Import tries to use default DFS directory instead of configured

    XMLWordPrintableJSON

Details

    • Bug
    • Status: Resolved
    • Critical
    • Resolution: Fixed
    • 1.6.0, 1.6.1
    • 1.6.2, 1.7.0
    • master, tserver
    • None

    Description

      Ran Shard randomwalk and saw a failure about a bulk imported file. Oddly, the path that it referenced was for the default dfs directory /accumulo instead of the configured volume I set /apps/accumulo.

      Additionally, bulk import is placing relative paths into metadata and not absolute paths, which also seems rather strange.

      2014-10-08 12:13:56,230 [tserver.Tablet] DEBUG: Looking at metadata {2s< file:/b-00004ee/I00004ef.rf [] 33312 false=269198,66282, 2s< file:/b-00004ee/I00004eg.rf [] 33312 false=251133,75656, ..., 2s< file:/b-00004ee/I00004f0.rf [] 33312 false=281377,54556, ..., 2s< future:148f0574f320007 [] 33313 false=node3.example.com:9997, 2s< srv:dir [] 33312 false=/c-00000000, 2s< srv:time [] 33312 false=M1412795627612, 2s< ~tab:~pr [] 33312 false=^@}

      2014-10-08 12:13:56,658 [fs.VolumeManagerImpl] DEBUG: Found candidate Volumes for Path but none of the Paths are valid on the candidates: hdfs://node1.example.com:8020/accumulo/tables/2s/b-00004ee/I00004f0.rf
2014-10-08 12:13:56,658 [fs.VolumeManagerImpl] DEBUG: Could not determine volume for Path: hdfs://node1.example.com:8020/accumulo/tables/2s/b-00004ee/I00004f0.rf
2014-10-08 12:13:56,673 [tserver.TabletServer] DEBUG: MultiScanSess 240.0.0.10:36725 22 entries in 0.05 secs (lookup_time:0.05 secs tablets:1 ranges:1)
2014-10-08 12:13:56,678 [tserver.FileManager] ERROR: Failed to open file hdfs://node1.example.com:8020/accumulo/tables/2s/b-00004ee/I00004f0.rf File does not exist: /accumulo/tables/2s/b-00004ee/I00004f0.rf
        at org.apache.hadoop.hdfs.server.namenode.INodeFile.valueOf(INodeFile.java:66)
        at org.apache.hadoop.hdfs.server.namenode.INodeFile.valueOf(INodeFile.java:56)
        at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocationsUpdateTimes(FSNamesystem.java:1876)
        at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocationsInt(FSNamesystem.java:1818)
        at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocations(FSNamesystem.java:1798)
        at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocations(FSNamesystem.java:1770)
        at org.apache.hadoop.hdfs.server.namenode.NameNodeRpcServer.getBlockLocations(NameNodeRpcServer.java:527)
        at org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolServerSideTranslatorPB.getBlockLocations(ClientNamenodeProtocolServerSideTranslatorPB.java:362)
        at org.apache.hadoop.hdfs.protocol.proto.ClientNamenodeProtocolProtos$ClientNamenodeProtocol$2.callBlockingMethod(ClientNamenodeProtocolProtos.java)
        at org.apache.hadoop.ipc.ProtobufRpcEngine$Server$ProtoBufRpcInvoker.call(ProtobufRpcEngine.java:619)
        at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:962)
        at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2039)
        at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2035)
        at java.security.AccessController.doPrivileged(Native Method)
        at javax.security.auth.Subject.doAs(Subject.java:415)
        at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1614)
        at org.apache.hadoop.ipc.Server$Handler.run(Server.java:2033)

2014-10-08 12:13:56,679 [tserver.TabletServer] WARN : exception while scanning tablet 2s<<
java.io.IOException: Failed to open hdfs://node1.example.com:8020/accumulo/tables/2s/b-00004ee/I00004f0.rf
        at org.apache.accumulo.tserver.FileManager.reserveReaders(FileManager.java:334)
        at org.apache.accumulo.tserver.FileManager.access$500(FileManager.java:59)
        at org.apache.accumulo.tserver.FileManager$ScanFileManager.openFiles(FileManager.java:491)
        at org.apache.accumulo.tserver.FileManager$ScanFileManager.openFileRefs(FileManager.java:479)
        at org.apache.accumulo.tserver.FileManager$ScanFileManager.openFiles(FileManager.java:499)
        at org.apache.accumulo.tserver.Tablet$ScanDataSource.createIterator(Tablet.java:2032)
        at org.apache.accumulo.tserver.Tablet$ScanDataSource.iterator(Tablet.java:1994)
        at org.apache.accumulo.core.iterators.system.SourceSwitchingIterator.seek(SourceSwitchingIterator.java:165)
        at org.apache.accumulo.tserver.Tablet.nextBatch(Tablet.java:1709)
        at org.apache.accumulo.tserver.Tablet.access$3200(Tablet.java:177)
        at org.apache.accumulo.tserver.Tablet$Scanner.read(Tablet.java:1851)
        at org.apache.accumulo.tserver.TabletServer$ThriftClientHandler$NextBatchTask.run(TabletServer.java:1049)
        at org.apache.accumulo.trace.instrument.TraceRunnable.run(TraceRunnable.java:47)
        at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
        at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
        at org.apache.accumulo.trace.instrument.TraceRunnable.run(TraceRunnable.java:47)
        at org.apache.accumulo.core.util.LoggingRunnable.run(LoggingRunnable.java:34)
        at java.lang.Thread.run(Thread.java:745)
Caused by: java.io.FileNotFoundException: File does not exist: /accumulo/tables/2s/b-00004ee/I00004f0.rf
        at org.apache.hadoop.hdfs.server.namenode.INodeFile.valueOf(INodeFile.java:66)
        at org.apache.hadoop.hdfs.server.namenode.INodeFile.valueOf(INodeFile.java:56)
        at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocationsUpdateTimes(FSNamesystem.java:1876)
        at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocationsInt(FSNamesystem.java:1818)
        at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocations(FSNamesystem.java:1798)
        at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocations(FSNamesystem.java:1770)
        at org.apache.hadoop.hdfs.server.namenode.NameNodeRpcServer.getBlockLocations(NameNodeRpcServer.java:527)
        at org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolServerSideTranslatorPB.getBlockLocations(ClientNamenodeProtocolServerSideTranslatorPB.java:362)
        at org.apache.hadoop.hdfs.protocol.proto.ClientNamenodeProtocolProtos$ClientNamenodeProtocol$2.callBlockingMethod(ClientNamenodeProtocolProtos.java)
        at org.apache.hadoop.ipc.ProtobufRpcEngine$Server$ProtoBufRpcInvoker.call(ProtobufRpcEngine.java:619)
        at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:962)
        at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2039)
        at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2035)
        at java.security.AccessController.doPrivileged(Native Method)
        at javax.security.auth.Subject.doAs(Subject.java:415)
        at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1614)
        at org.apache.hadoop.ipc.Server$Handler.run(Server.java:2033)

        at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
        at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
        at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
        at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
        at org.apache.hadoop.ipc.RemoteException.instantiateException(RemoteException.java:106)
        at org.apache.hadoop.ipc.RemoteException.unwrapRemoteException(RemoteException.java:73)
        at org.apache.hadoop.hdfs.DFSClient.callGetBlockLocations(DFSClient.java:1192)
        at org.apache.hadoop.hdfs.DFSClient.getLocatedBlocks(DFSClient.java:1180)
        at org.apache.hadoop.hdfs.DFSClient.getLocatedBlocks(DFSClient.java:1170)
        at org.apache.hadoop.hdfs.DFSInputStream.fetchLocatedBlocksAndGetLastBlockLength(DFSInputStream.java:270)
        at org.apache.hadoop.hdfs.DFSInputStream.openInfo(DFSInputStream.java:237)
        at org.apache.hadoop.hdfs.DFSInputStream.<init>(DFSInputStream.java:230)
        at org.apache.hadoop.hdfs.DFSClient.open(DFSClient.java:1430)
        at org.apache.hadoop.hdfs.DistributedFileSystem$3.doCall(DistributedFileSystem.java:302)
        at org.apache.hadoop.hdfs.DistributedFileSystem$3.doCall(DistributedFileSystem.java:298)
        at org.apache.hadoop.fs.FileSystemLinkResolver.resolve(FileSystemLinkResolver.java:81)
        at org.apache.hadoop.hdfs.DistributedFileSystem.open(DistributedFileSystem.java:298)
        at org.apache.hadoop.fs.FileSystem.open(FileSystem.java:766)
        at org.apache.accumulo.core.file.blockfile.impl.CachableBlockFile$Reader.getBCFile(CachableBlockFile.java:261)
        at org.apache.accumulo.core.file.blockfile.impl.CachableBlockFile$Reader.access$100(CachableBlockFile.java:144)
        at org.apache.accumulo.core.file.blockfile.impl.CachableBlockFile$Reader$MetaBlockLoader.get(CachableBlockFile.java:216)
        at org.apache.accumulo.core.file.blockfile.impl.CachableBlockFile$Reader.getBlock(CachableBlockFile.java:318)
        at org.apache.accumulo.core.file.blockfile.impl.CachableBlockFile$Reader.getMetaBlock(CachableBlockFile.java:372)
        at org.apache.accumulo.core.file.blockfile.impl.CachableBlockFile$Reader.getMetaBlock(CachableBlockFile.java:144)
        at org.apache.accumulo.core.file.rfile.RFile$Reader.<init>(RFile.java:825)
        at org.apache.accumulo.core.file.rfile.RFileOperations.openReader(RFileOperations.java:79)
        at org.apache.accumulo.core.file.DispatchingFileFactory.openReader(FileOperations.java:119)
        at org.apache.accumulo.tserver.FileManager.reserveReaders(FileManager.java:315)
        ... 17 more
Caused by: org.apache.hadoop.ipc.RemoteException(java.io.FileNotFoundException): File does not exist: /accumulo/tables/2s/b-00004ee/I00004f0.rf
        at org.apache.hadoop.hdfs.server.namenode.INodeFile.valueOf(INodeFile.java:66)
        at org.apache.hadoop.hdfs.server.namenode.INodeFile.valueOf(INodeFile.java:56)
        at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocationsUpdateTimes(FSNamesystem.java:1876)
        at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocationsInt(FSNamesystem.java:1818)
        at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocations(FSNamesystem.java:1798)
        at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocations(FSNamesystem.java:1770)
        at org.apache.hadoop.hdfs.server.namenode.NameNodeRpcServer.getBlockLocations(NameNodeRpcServer.java:527)
        at org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolServerSideTranslatorPB.getBlockLocations(ClientNamenodeProtocolServerSideTranslatorPB.java:362)
        at org.apache.hadoop.hdfs.protocol.proto.ClientNamenodeProtocolProtos$ClientNamenodeProtocol$2.callBlockingMethod(ClientNamenodeProtocolProtos.java)
        at org.apache.hadoop.ipc.ProtobufRpcEngine$Server$ProtoBufRpcInvoker.call(ProtobufRpcEngine.java:619)
        at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:962)
        at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2039)
        at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2035)
        at java.security.AccessController.doPrivileged(Native Method)
        at javax.security.auth.Subject.doAs(Subject.java:415)
        at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1614)
        at org.apache.hadoop.ipc.Server$Handler.run(Server.java:2033)

        at org.apache.hadoop.ipc.Client.call(Client.java:1468)
        at org.apache.hadoop.ipc.Client.call(Client.java:1399)
        at org.apache.hadoop.ipc.ProtobufRpcEngine$Invoker.invoke(ProtobufRpcEngine.java:232)
        at com.sun.proxy.$Proxy19.getBlockLocations(Unknown Source)
        at org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolTranslatorPB.getBlockLocations(ClientNamenodeProtocolTranslatorPB.java:253)
        at sun.reflect.GeneratedMethodAccessor15.invoke(Unknown Source)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
        at java.lang.reflect.Method.invoke(Method.java:606)
        at org.apache.hadoop.io.retry.RetryInvocationHandler.invokeMethod(RetryInvocationHandler.java:187)
        at org.apache.hadoop.io.retry.RetryInvocationHandler.invoke(RetryInvocationHandler.java:102)
        at com.sun.proxy.$Proxy20.getBlockLocations(Unknown Source)
        at org.apache.hadoop.hdfs.DFSClient.callGetBlockLocations(DFSClient.java:1190)
        ... 38 more
2014-10-08 12:13:56,684 [problems.ProblemReports] DEBUG: Filing problem report 2s FILE_READ hdfs://node1.example.com:8020/accumulo/tables/2s/b-00004ee/I00004f0.rf

      /accumulo/tables/2s/b-00004ee/I00004f0.rf is an invalid path on my system given the configuration

        <property>
    <name>instance.volumes</name>
    <value>hdfs://node1.example.com:8020/apps/accumulo</value>
  </property>

      Attachments

        Issue Links

          relates to

          Bug - A problem which impairs or prevents the functions of the product. ACCUMULO-3234 Merge fails to complete

          • Blocker - Blocks development and/or testing work, production could not run
          • Resolved

          Bug - A problem which impairs or prevents the functions of the product. ACCUMULO-3216 VolumeManagerImpl.findMatchingFilesystem is lacking

          • Critical - Crashes, loss of data, severe memory leak.
          • Resolved

          Activity

            People

              elserj Josh Elser
              elserj Josh Elser
              Votes:
              0 Vote for this issue
              Watchers:
              2 Start watching this issue

              Dates

                Created:
                Updated:
                Resolved:

                Time Tracking

                  Estimated:
                  Original Estimate - Not Specified
                  Not Specified
                  Remaining:
                  Remaining Estimate - 0h
                  0h
                  Logged:
                  Time Spent - 1h
                  1h